Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.8e-90 335.9 168 100.0
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.4e-47 193.4 165 58.2
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 7.2e-47 191.0 168 57.7
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 6.7e-45 184.5 171 56.1
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.5e-44 183.3 172 55.2
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.3e-43 180.3 172 55.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.3e-43 180.3 172 55.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.3e-43 180.3 172 55.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.7e-43 179.9 127 63.8
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.8e-43 178.3 165 55.8
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 8.2e-43 177.6 171 52.0
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 4.1e-42 175.3 171 52.0
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-41 172.9 169 50.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 4.5e-41 171.8 171 51.5
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.0e-40 170.6 168 54.8
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.0e-40 170.6 168 54.8
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 3.8e-40 168.7 169 49.7
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.7e-38 161.8 119 62.2
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 2.0e-36 156.4 122 59.0
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 2.6e-36 156.0 120 59.2
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.3e-36 155.6 119 60.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 5.7e-36 154.8 119 60.5
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 9.7e-36 154.1 119 58.0
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.7e-35 153.3 122 59.0
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 4.8e-35 151.8 119 58.0
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.4e-34 150.2 165 48.5
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.7e-33 146.0 166 49.4
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.5e-33 145.2 120 58.3
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 5.9e-33 144.8 127 52.8
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 7.7e-33 144.4 119 53.8
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.3e-32 143.7 119 58.8
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 2.2e-32 142.9 124 56.5
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 2.2e-32 142.9 120 55.0
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.9e-32 142.5 117 59.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 3.8e-32 142.1 127 55.1
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 3.8e-32 142.1 119 53.8
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 8.5e-32 141.0 119 52.9
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.1e-31 140.6 125 51.2
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.5e-31 140.2 119 52.9
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.9e-31 139.8 119 57.1
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.9e-31 139.8 119 52.9
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.9e-31 139.8 119 52.9
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.9e-31 139.8 119 52.9
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.9e-31 139.8 119 52.9
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.9e-31 139.8 119 55.5
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.9e-31 139.8 119 52.9
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.9e-31 139.8 127 54.3
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 2.5e-31 139.4 119 54.6
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.2e-31 139.0 119 55.5
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 4.2e-31 138.7 127 51.2
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 4.2e-31 138.7 128 50.0
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 4.2e-31 138.7 119 56.3
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 4.2e-31 138.7 119 53.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 4.2e-31 138.7 125 52.8
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 4.2e-31 138.7 121 56.2
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 5.5e-31 138.3 119 53.8
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 7.2e-31 137.9 125 52.8
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 7.2e-31 137.9 119 53.8
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 7.2e-31 137.9 120 55.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 9.4e-31 137.5 124 50.0
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 9.4e-31 137.5 119 52.9
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 9.4e-31 137.5 120 54.2
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.4e-31 137.5 120 55.8
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 9.4e-31 137.5 127 51.2
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.6e-30 136.7 119 52.9
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.6e-30 136.7 119 54.6
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.1e-30 136.3 119 56.3
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 2.1e-30 136.3 122 50.0
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.1e-30 136.3 120 54.2
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.7e-30 136.0 125 53.6
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.7e-30 136.0 119 52.9
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.7e-30 136.0 119 54.6
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.7e-30 136.0 119 53.8
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.6e-30 135.6 122 54.1
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.6e-30 135.6 119 52.1
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 4.7e-30 135.2 119 54.6
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 4.7e-30 135.2 125 48.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.7e-30 135.2 119 52.1
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 6.1e-30 134.8 119 52.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 6.1e-30 134.8 123 54.5
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 8.0e-30 134.4 119 50.4
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 8.0e-30 134.4 127 51.2
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.0e-30 134.4 119 51.3
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.0e-30 134.4 120 51.7
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.0e-29 134.0 125 48.0
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.0e-29 134.0 127 52.0
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.0e-29 134.0 117 52.1
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.0e-29 134.0 119 52.1
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.0e-29 134.0 119 52.9
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.8e-29 133.3 119 54.6
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.8e-29 133.3 119 54.6
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 3.0e-29 132.5 119 54.6
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.0e-29 132.5 125 51.2
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 3.0e-29 132.5 119 53.8
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 3.0e-29 132.5 119 54.6
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.0e-29 132.5 139 51.1
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.0e-29 132.5 120 50.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 4.0e-29 132.1 128 47.7
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 4.0e-29 132.1 119 52.1
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 4.0e-29 132.1 119 50.4
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 4.0e-29 132.1 119 52.1
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 4.0e-29 132.1 122 51.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.2e-29 131.7 120 51.7
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 5.2e-29 131.7 119 52.9
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 5.2e-29 131.7 119 53.8
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 8.8e-29 131.0 120 51.7
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.2e-28 130.6 119 50.4
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.2e-28 130.6 119 52.1
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-28 130.6 119 51.3
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-28 130.2 119 51.3
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.5e-28 130.2 119 51.3
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.0e-28 129.8 119 50.4
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 3.4e-28 129.0 122 50.0
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.7e-28 128.3 119 52.1
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 5.7e-28 128.3 120 49.2
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 5.7e-28 128.3 118 51.7
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 9.8e-28 127.5 119 50.4
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 9.8e-28 127.5 127 48.0
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.3e-27 127.1 121 50.4
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.3e-27 127.1 122 49.2
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.2e-27 126.3 65 93.8
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.2e-27 126.3 108 57.4
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 4.8e-27 125.2 119 50.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 8.3e-27 124.4 119 49.6
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.1e-26 124.0 119 49.6
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.1e-26 122.5 119 50.4
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 3.1e-26 122.5 119 47.9
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 4.1e-26 122.1 119 48.7
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 4.1e-26 122.1 119 47.9
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.1e-26 122.1 119 48.7
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 7.0e-26 121.3 119 47.9
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.0e-26 121.3 118 52.5
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 7.0e-26 121.3 121 47.1
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 9.1e-26 120.9 128 43.0
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 9.1e-26 120.9 128 43.0
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.2e-25 120.6 119 45.4
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.2e-25 120.6 119 47.1
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.6e-25 120.2 119 48.7
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.6e-25 120.2 119 47.9
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.0e-25 119.8 119 45.4
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.7e-25 119.4 119 49.6
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.5e-25 118.6 95 55.8
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.5e-25 118.6 95 55.8
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 7.7e-25 117.9 121 47.9
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.8e-24 115.5 100 55.0
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 5.0e-24 115.2 125 43.2
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.9e-23 113.2 134 41.0
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.5e-23 112.8 100 52.0
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 4.2e-23 112.1 122 45.1
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 9.4e-23 110.9 110 47.3
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.6e-22 110.2 132 41.7
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.7e-22 109.4 120 45.8
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.8e-21 104.8 109 45.0
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 5.7e-20 101.7 129 44.2
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 7.5e-20 101.3 120 44.2
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.3e-19 100.5 90 51.1
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 8.3e-19 97.8 110 45.5
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 5.9e-17 91.7 119 42.0
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 5.6e-15 85.1 80 50.0
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.0e-14 81.3 61 57.4
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.8e-13 80.1 112 38.4
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 8.9e-13 77.8 67 55.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.4e-12 75.9 55 67.3
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.2e-11 73.2 57 57.9
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.9e-11 72.8 124 34.7
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.4e-11 71.6 63 55.6
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.4e-11 71.6 63 55.6
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 8.3e-11 71.2 56 57.1
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-10 70.5 49 67.3
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.1e-10 68.9 69 44.9
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.4e-10 68.6 48 66.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.9e-07 60.1 82 40.2
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 5.6e-07 58.5 62 48.4
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 9.5e-07 57.8 62 46.8
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.6e-06 55.8 62 41.9


User provided reference genes

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