Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G35830 Arabidopsis lyrata HOM05D002846 ORTHO05D002692 1.4e-108 396.4 216 100.0
BcaC01g03489 Brassica carinata HOM05D002846 ORTHO05D002692 1.9e-84 316.2 218 75.7
BolC3t17475H Brassica oleracea HOM05D002846 ORTHO05D002692 1.9e-84 316.2 218 75.7
C03p51900 Brassica napus HOM05D002846 ORTHO05D002692 2.7e-83 312.4 218 75.2
A03p42420 Brassica napus HOM05D002846 ORTHO05D002692 1.4e-82 310.1 218 74.8
BraA03t13394Z Brassica rapa HOM05D002846 ORTHO05D002692 1.4e-82 310.1 218 74.8
BcaB04g19182 Brassica carinata HOM05D002846 ORTHO05D002692 7.0e-79 297.7 217 72.4
BcaB04g20571 Brassica carinata HOM05D002846 ORTHO05D002692 7.0e-79 297.7 217 72.8
A01p33250 Brassica napus HOM05D002846 ORTHO05D002692 2.0e-78 296.2 217 77.4
BraA01t03443Z Brassica rapa HOM05D002846 ORTHO05D002692 2.0e-78 296.2 217 77.4
Carub.0003s2176 Capsella rubella HOM05D002846 ORTHO05D002692 2.0e-78 296.2 216 73.6
BcaC09g49107 Brassica carinata HOM05D002846 ORTHO05D002692 1.3e-77 293.5 217 74.2
BolC1t04204H Brassica oleracea HOM05D002846 ORTHO05D002692 1.3e-77 293.5 217 71.9
C01p42460 Brassica napus HOM05D002846 ORTHO05D002692 2.3e-77 292.7 217 74.2
BcaB06g26277 Brassica carinata HOM05D002846 ORTHO05D002692 1.9e-76 289.7 218 72.5
C05p41700 Brassica napus HOM05D002846 ORTHO05D002692 1.8e-74 283.1 217 71.4
BolC5t32905H Brassica oleracea HOM05D002846 ORTHO05D002692 1.8e-74 283.1 217 71.4
CARHR097660 Cardamine hirsuta HOM05D002846 ORTHO05D002692 1.2e-73 280.4 213 72.8
A05p27020 Brassica napus HOM05D002846 ORTHO05D002692 1.5e-73 280.0 217 71.0
BraA05t21588Z Brassica rapa HOM05D002846 ORTHO05D002692 1.5e-73 280.0 217 71.0
Thhalv10021505m.g Eutrema salsugineum HOM05D002846 ORTHO05D002692 2.0e-73 279.6 218 77.1
AT3G21710 Arabidopsis thaliana HOM05D002846 ORTHO05D002692 2.2e-72 276.2 150 95.3
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 3.5e-70 268.9 214 68.2
BcaC05g28139 Brassica carinata HOM05D002846 ORTHO05D002692 8.9e-58 227.6 217 61.3
Aa31LG8G8340 Aethionema arabicum HOM05D002846 ORTHO05D002692 2.6e-49 199.5 213 58.7
THA.LOC104808493 Tarenaya hassleriana HOM05D002846 ORTHO05D002692 1.3e-37 160.6 219 53.9
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 1.3e-21 107.5 194 39.2
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 3.0e-21 106.3 222 37.8
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 5.1e-21 105.5 186 42.5
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 5.1e-21 105.5 193 37.3
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 1.9e-20 103.6 230 38.3
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.9e-20 103.6 192 38.5
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 9.6e-20 101.3 193 36.8
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 2.1e-19 100.1 185 38.4
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 2.1e-19 100.1 187 39.6
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 2.8e-19 99.8 185 38.4
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 3.7e-19 99.4 204 38.7
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 4.8e-19 99.0 183 41.0
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 4.8e-19 99.0 189 37.0
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 6.2e-19 98.6 182 41.2
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 6.2e-19 98.6 184 40.2
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.4e-18 96.7 187 41.2
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 3.1e-18 96.3 186 40.9
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 4.0e-18 95.9 185 37.3
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 5.3e-18 95.5 196 40.3
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 6.9e-18 95.1 189 37.6
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 1.2e-17 94.4 198 38.4
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 1.2e-17 94.4 185 37.8
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 2.6e-17 93.2 192 34.9
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 3.4e-17 92.8 186 40.9
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 3.4e-17 92.8 190 37.9
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 4.5e-17 92.4 186 40.9
VMungo1080G0378 Vigna mungo HOM05D002846 ORTHO05D002692 4.5e-17 92.4 200 38.0
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 1.0e-16 91.3 192 37.0
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 1.0e-16 91.3 184 39.1
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.3e-16 90.9 178 39.3
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 1.3e-16 90.9 185 37.3
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.3e-16 90.9 193 35.8
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 1.7e-16 90.5 193 35.8
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 2.2e-16 90.1 195 34.9
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 2.9e-16 89.7 178 38.8
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 2.9e-16 89.7 189 39.7
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 2.9e-16 89.7 187 38.5
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 6.5e-16 88.6 180 37.2
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 6.5e-16 88.6 194 35.6
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 1.1e-15 87.8 191 34.6
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 1.4e-15 87.4 204 33.8
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.4e-15 87.4 186 37.6
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.9e-15 87.0 180 39.4
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 2.5e-15 86.7 180 37.2
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 7.1e-15 85.1 187 35.8
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 7.1e-15 85.1 196 36.7
HanXRQChr15g0496381 Helianthus annuus HOM05D002846 ORTHO05D002692 7.1e-15 85.1 191 36.1
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 7.1e-15 85.1 186 38.2
PGR042G0859 Punica granatum HOM05D002846 ORTHO05D002692 7.1e-15 85.1 201 35.3
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.2e-14 84.3 197 35.5
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 1.6e-14 84.0 207 34.3
Oeu041933.1 Olea europaea HOM05D002846 ORTHO05D002692 2.1e-14 83.6 190 36.3
Sc12g0002340 Simmondsia chinensis HOM05D002846 ORTHO05D002692 2.1e-14 83.6 205 34.6
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 4.6e-14 82.4 178 36.5
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 4.6e-14 82.4 194 34.5
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 6.0e-14 82.0 185 35.1
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 7.9e-14 81.6 188 35.1
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 7.9e-14 81.6 179 38.0
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 1.0e-13 81.3 186 36.0
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 1.0e-13 81.3 194 37.1
arahy.Tifrunner.gnm1.ann1.M85TWM Arachis hypogaea HOM05D002846 ORTHO05D002692 1.8e-13 80.5 125 41.6
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.3e-13 80.1 194 35.1
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 3.9e-13 79.3 164 38.4
Duzib268G1153 Durio zibethinus HOM05D002846 ORTHO05D002692 3.9e-13 79.3 188 36.7
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 3.9e-13 79.3 178 36.0
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 5.1e-13 79.0 179 36.3
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 8.7e-13 78.2 193 35.2
arahy.Tifrunner.gnm1.ann1.EJQ6C2 Arachis hypogaea HOM05D002846 ORTHO05D002692 1.5e-12 77.4 125 40.8
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 4.3e-12 75.9 191 34.0
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 4.3e-12 75.9 203 34.0
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 5.7e-12 75.5 183 36.1
Potri.002G230300 Populus trichocarpa HOM05D002846 ORTHO05D002692 7.4e-12 75.1 128 45.3
MSTRG.14152 Avicennia marina HOM05D002846 ORTHO05D002692 9.6e-12 74.7 178 31.5
Lj3g0014799 Lotus japonicus HOM05D002846 ORTHO05D002692 9.6e-12 74.7 191 31.9
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 9.6e-12 74.7 195 31.8
Manes.12G075700 Manihot esculenta HOM05D002846 ORTHO05D002692 1.3e-11 74.3 131 40.5
Medtr4g046870 Medicago truncatula HOM05D002846 ORTHO05D002692 1.6e-11 73.9 117 46.2
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.1e-11 73.6 191 35.6
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 2.8e-11 73.2 197 33.0
Dinv02736 Davidia involucrata HOM05D002846 ORTHO05D002692 3.7e-11 72.8 120 45.0
FAN25G2313 Fragaria x ananassa HOM05D002846 ORTHO05D002692 4.8e-11 72.4 198 32.3
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 6.3e-11 72.0 188 33.0
Migut.H01224 Erythranthe guttata HOM05D002846 ORTHO05D002692 6.3e-11 72.0 187 34.8
Sabra16G0285000 Salix brachista HOM05D002846 ORTHO05D002692 6.3e-11 72.0 198 31.3
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 6.3e-11 72.0 189 35.4
Gorai.005G150200 Gossypium raimondii HOM05D002846 ORTHO05D002692 8.2e-11 71.6 99 46.5
MBI02_g23957_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 1.1e-10 71.2 179 33.5
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 1.1e-10 71.2 189 31.7
Lalb_Chr24g0393141 Lupinus albus HOM05D002846 ORTHO05D002692 1.8e-10 70.5 126 40.5
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 1.8e-10 70.5 201 31.3
Dinv40727 Davidia involucrata HOM05D002846 ORTHO05D002692 2.4e-10 70.1 177 31.6
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 3.1e-10 69.7 180 34.4
Gohir.D02G134300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 3.1e-10 69.7 99 46.5
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 3.1e-10 69.7 203 33.0
Glyma.13G308000 Glycine max HOM05D002846 ORTHO05D002692 4.1e-10 69.3 106 46.2
Hund01143 Selenicereus undatus HOM05D002846 ORTHO05D002692 4.1e-10 69.3 132 37.9
EL10Ac9g20666 Beta vulgaris HOM05D002846 ORTHO05D002692 5.3e-10 68.9 200 31.0
Manes.03G127850 Manihot esculenta HOM05D002846 ORTHO05D002692 5.3e-10 68.9 212 30.7
Nn1g03606 Nelumbo nucifera HOM05D002846 ORTHO05D002692 5.3e-10 68.9 148 38.5
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 5.3e-10 68.9 194 30.9
MSTRG.12286 Avicennia marina HOM05D002846 ORTHO05D002692 6.9e-10 68.6 181 33.1
MELO3C019247.2 Cucumis melo HOM05D002846 ORTHO05D002692 6.9e-10 68.6 180 32.8
PSO675G7460 Papaver somniferum HOM05D002846 ORTHO05D002692 6.9e-10 68.6 199 33.7
Nitab4.5_0015723g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 9.0e-10 68.2 180 33.9
Sed0000680 Sechium edule HOM05D002846 ORTHO05D002692 9.0e-10 68.2 180 33.3
CiPaw.03G161600 Carya illinoinensis HOM05D002846 ORTHO05D002692 1.2e-09 67.8 138 37.7
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 1.5e-09 67.4 179 33.0
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 2.0e-09 67.0 151 34.4
arahy.Tifrunner.gnm1.ann1.53UQ7J Arachis hypogaea HOM05D002846 ORTHO05D002692 2.6e-09 66.6 110 39.1
AUR62037135 Chenopodium quinoa HOM05D002846 ORTHO05D002692 2.6e-09 66.6 191 33.5
Cc05_g13390 Coffea canephora HOM05D002846 ORTHO05D002692 2.6e-09 66.6 194 30.9
CsaV3_2G035090 Cucumis sativus L. HOM05D002846 ORTHO05D002692 2.6e-09 66.6 180 32.2
Duzib213G0532 Durio zibethinus HOM05D002846 ORTHO05D002692 2.6e-09 66.6 185 33.0
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 2.6e-09 66.6 196 30.6
Sabra11G0121900 Salix brachista HOM05D002846 ORTHO05D002692 2.6e-09 66.6 192 32.3
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 3.4e-09 66.2 156 32.7
DCAR_019769 Daucus carota HOM05D002846 ORTHO05D002692 4.5e-09 65.9 105 41.9
arahy.Tifrunner.gnm1.ann1.JLE0C4 Arachis hypogaea HOM05D002846 ORTHO05D002692 5.9e-09 65.5 110 38.2
EL10Ac4g07933 Beta vulgaris HOM05D019198 ORTHO05D002692 5.9e-09 65.5 175 29.7
Lsat_1_v5_gn_8_128540 Lactuca sativa HOM05D002846 ORTHO05D002692 7.6e-09 65.1 205 30.7
Oeu036754.1 Olea europaea HOM05D002846 ORTHO05D002692 7.6e-09 65.1 184 34.8
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 7.6e-09 65.1 187 30.5
TWI38G1873 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 1.0e-08 64.7 202 31.2
Actinidia09707 Actinidia chinensis HOM05D002846 ORTHO05D002692 1.3e-08 64.3 135 39.3
MBI18_g03004_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 1.3e-08 64.3 114 43.0
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.7e-08 63.9 197 33.5
Oeu027251.1 Olea europaea HOM05D002846 ORTHO05D002692 1.7e-08 63.9 183 32.2
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 1.7e-08 63.9 188 29.8
DCAR_010032 Daucus carota HOM05D002846 ORTHO05D002692 2.2e-08 63.5 186 32.3
PSO541G2462 Papaver somniferum HOM05D002846 ORTHO05D002692 2.9e-08 63.2 203 31.0
Thecc.07G046400 Theobroma cacao HOM05D002846 ORTHO05D002692 2.9e-08 63.2 191 32.5
MD03G1209200 Malus domestica HOM05D002846 ORTHO05D002692 3.8e-08 62.8 191 30.4
Actinidia27214 Actinidia chinensis HOM05D002846 ORTHO05D002692 5.0e-08 62.4 193 33.2
PGSC0003DMG400008737 Solanum tuberosum HOM05D002846 ORTHO05D002692 5.0e-08 62.4 182 29.7
Os07g0524000 Oryza sativa ssp. japonica HOM05D002846 ORTHO05D002692 8.5e-08 61.6 197 27.9
TWI38G2122 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 8.5e-08 61.6 204 30.9
HanXRQChr05g0159181 Helianthus annuus HOM05D002846 ORTHO05D002692 1.1e-07 61.2 182 28.0
Hma1.2p1_1344F.1_g277060 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.4e-07 60.8 181 29.8
MD17G1094800 Malus domestica HOM05D002846 ORTHO05D002692 1.4e-07 60.8 116 39.7
ECA246G4222 Erigeron canadensis HOM05D002846 ORTHO05D002692 2.5e-07 60.1 180 29.4
Lj1A867G31 Lonicera japonica HOM05D002846 ORTHO05D002692 2.5e-07 60.1 120 37.5
Hund02116 Selenicereus undatus HOM05D019198 ORTHO05D002692 2.5e-07 60.1 181 28.2
AUR62025052 Chenopodium quinoa HOM05D002846 ORTHO05D002692 4.2e-07 59.3 108 40.7
Sopen05g027000 Solanum pennellii HOM05D002846 ORTHO05D002692 4.2e-07 59.3 166 31.9
TPR.G19979 Trifolium pratense HOM05D002846 ORTHO05D002692 4.2e-07 59.3 187 29.9
FAN21G2316 Fragaria x ananassa HOM05D002846 ORTHO05D002692 5.5e-07 58.9 198 30.8
Lalb_Chr19g0134811 Lupinus albus HOM05D002846 ORTHO05D002692 7.2e-07 58.5 133 35.3
MELO3C018090.2 Cucumis melo HOM05D002846 ORTHO05D002692 9.3e-07 58.2 193 29.5
Lj1A758T10 Lonicera japonica HOM05D002846 ORTHO05D002692 9.3e-07 58.2 114 41.2
ClCG02G008550 Citrullus lanatus HOM05D002846 ORTHO05D002692 1.2e-06 57.8 189 31.2
CsaV3_3G023230 Cucumis sativus L. HOM05D002846 ORTHO05D002692 1.6e-06 57.4 198 28.3
Eucgr.F00971 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.6e-06 57.4 180 30.0
Prupe.4G205800 Prunus persica HOM05D002846 ORTHO05D002692 3.6e-06 56.2 184 29.3
Gohir.D13G087600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 4.6e-06 55.8 53 52.8
Gorai.013G100100 Gossypium raimondii HOM05D002846 ORTHO05D002692 4.6e-06 55.8 53 52.8
CSS0028377 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 6.1e-06 55.5 198 28.3
FvH4_3g22010 Fragaria vesca HOM05D002846 ORTHO05D002692 6.1e-06 55.5 202 29.7
Sed0021551 Sechium edule HOM05D002846 ORTHO05D002692 6.1e-06 55.5 108 34.3
ClCG02G001830 Citrullus lanatus HOM05D002846 ORTHO05D002692 7.9e-06 55.1 104 35.6
CsaV3_7G003710 Cucumis sativus L. HOM05D002846 ORTHO05D002692 7.9e-06 55.1 196 27.6
Psat5g251520 Pisum sativum HOM05D002846 ORTHO05D002692 7.9e-06 55.1 182 29.1


User provided reference genes

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