Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.1e-226 788.1 388 100.0
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.6e-206 721.1 391 92.3
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.0e-192 676.8 393 86.5
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 4.2e-191 671.4 397 85.1
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 5.0e-184 647.9 393 84.7
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 5.0e-184 647.9 393 84.7
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.9e-183 646.0 394 84.3
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 2.1e-182 642.5 402 82.8
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.4e-181 639.8 399 83.2
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.2e-177 626.7 393 81.9
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 9.7e-164 580.5 394 74.1
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 9.4e-159 563.9 394 73.9
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 9.4e-159 563.9 394 73.1
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 5.2e-157 558.1 394 73.1
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 5.2e-157 558.1 394 72.8
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.3e-156 555.4 395 72.4
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 2.8e-155 552.4 391 71.6
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.4e-154 549.3 326 82.5
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.6e-140 502.7 398 67.1
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 3.3e-135 485.7 399 60.4
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.8e-125 453.4 400 57.5
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 8.9e-125 451.1 397 59.2
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 7.5e-124 448.0 413 57.1
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 7.5e-124 448.0 394 59.9
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 2.9e-123 446.0 402 57.2
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 2.9e-123 446.0 353 60.6
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 8.3e-123 444.5 327 66.4
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 8.3e-123 444.5 391 57.8
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.9e-122 443.4 405 56.3
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.9e-122 443.4 401 55.9
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 7.0e-122 441.4 369 60.7
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 9.2e-122 441.0 396 59.1
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.6e-121 440.3 399 56.1
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 3.0e-120 436.0 401 54.4
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.1e-119 434.1 307 64.5
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 1.9e-119 433.3 329 62.3
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.5e-119 433.0 309 65.0
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.2e-118 430.6 386 55.4
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.6e-118 430.3 396 58.3
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.4e-117 427.2 386 54.9
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 2.3e-117 426.4 317 61.8
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 3.1e-117 426.0 309 63.4
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 5.2e-117 425.2 393 54.2
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 5.2e-117 425.2 329 60.5
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 8.9e-117 424.5 338 61.8
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 2.0e-116 423.3 321 62.0
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 4.4e-116 422.2 379 55.9
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 4.4e-116 422.2 332 62.3
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 5.8e-116 421.8 327 60.2
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 7.5e-116 421.4 405 53.3
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 6.4e-115 418.3 384 54.4
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 8.3e-115 417.9 323 63.2
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 1.1e-114 417.5 321 63.9
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 2.4e-114 416.4 324 59.9
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.4e-114 416.4 382 54.5
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.2e-114 416.0 346 60.1
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 9.2e-114 414.5 309 62.8
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 2.1e-113 413.3 315 62.2
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 2.1e-113 413.3 318 61.0
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 2.3e-112 409.8 389 52.2
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 3.9e-112 409.1 309 62.5
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.9e-111 406.8 358 58.1
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 4.3e-111 405.6 325 57.5
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 4.3e-111 405.6 347 56.5
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 7.3e-111 404.8 325 61.2
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 3.6e-110 402.5 371 53.4
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 3.6e-110 402.5 325 57.8
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 3.1e-109 399.4 306 59.5
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 5.2e-109 398.7 342 57.0
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 6.8e-109 398.3 298 68.8
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 6.8e-109 398.3 388 52.3
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.5e-108 397.1 385 51.7
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.6e-108 396.4 462 49.1
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 4.4e-108 395.6 445 52.8
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 5.8e-108 395.2 320 56.6
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 9.9e-108 394.4 328 55.8
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.9e-107 392.1 326 55.2
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.9e-107 392.1 322 55.9
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.4e-106 390.6 324 57.7
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.4e-106 390.6 325 55.4
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.2e-105 387.5 321 56.4
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.6e-105 387.1 303 62.0
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.9e-104 382.5 324 54.9
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 1.1e-103 380.9 306 56.2
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 4.3e-103 379.0 384 51.0
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 7.3e-103 378.3 323 57.3
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 3.6e-102 375.9 319 55.5
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 4.8e-102 375.6 318 56.0
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 6.2e-102 375.2 384 50.8
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 5.3e-101 372.1 329 57.8
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.7e-99 367.1 317 54.6
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 4.2e-98 362.5 252 66.7
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 5.4e-98 362.1 385 51.7
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.2e-97 360.9 340 53.2
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 2.7e-97 359.8 317 57.1
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 6.0e-97 358.6 364 48.6
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.7e-96 357.1 302 58.9
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.5e-95 354.0 374 46.5
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 8.1e-94 348.2 316 50.0
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 6.9e-93 345.1 316 49.4
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 7.6e-92 341.7 361 48.2
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 2.9e-91 339.7 374 46.3
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 4.6e-89 332.4 240 63.3
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 8.1e-86 321.6 345 49.3
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.5e-84 317.4 323 46.7
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 5.1e-80 302.4 233 61.8
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 7.4e-79 298.5 280 56.4
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.8e-77 293.9 229 61.6
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 2.4e-77 293.5 272 52.9
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.4e-74 284.3 257 55.3
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 7.9e-73 278.5 357 44.0
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 1.6e-70 270.8 203 62.1
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 9.0e-69 265.0 312 45.5
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 3.2e-58 229.9 351 40.5
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 1.8e-53 214.2 123 82.1
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 3.5e-52 209.9 248 44.4
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 4.5e-52 209.5 189 54.5
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 9.4e-42 175.3 132 63.6
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 9.1e-37 158.7 303 32.3
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 5.9e-36 156.0 181 42.0
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 7.7e-36 155.6 176 47.2
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.3e-35 154.8 304 28.3
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 5.5e-34 149.4 123 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 4.5e-28 129.8 228 36.4
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.0e-24 118.6 218 42.7
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 2.3e-24 117.5 77 67.5
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 3.0e-24 117.1 150 39.3
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.5e-23 114.8 77 67.5
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.4e-21 108.2 102 54.9
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 9.2e-21 105.5 254 27.2
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.9e-18 97.8 87 51.7
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 2.5e-18 97.4 273 25.3
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.4e-16 91.7 91 47.3
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.2e-15 88.6 114 37.7
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.5e-12 77.0 311 22.2
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 6.6e-11 72.8 71 50.7
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.1e-08 65.5 39 66.7
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.8e-08 64.7 70 45.7
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.2e-07 62.0 169 28.4
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.2e-07 62.0 169 28.4


User provided reference genes

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