Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.7e-238 828.9 412 100.0
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.6e-228 795.8 412 95.6
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 3.3e-226 788.1 412 94.9
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.7e-222 775.8 413 93.7
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.2e-215 753.1 415 91.3
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 2.0e-215 752.3 413 91.8
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.9e-213 745.7 417 90.6
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.2e-213 745.0 415 90.4
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 7.1e-213 743.8 417 90.4
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.3e-211 739.6 412 90.5
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 3.9e-211 738.0 414 89.6
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-207 726.1 412 89.1
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 4.4e-207 724.5 413 88.1
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 6.4e-206 720.7 415 86.7
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.0e-203 713.4 394 89.8
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 3.9e-203 711.4 412 87.6
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 3.8e-198 694.9 408 83.3
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.1e-194 683.3 419 84.0
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.1e-193 679.1 350 95.4
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 1.1e-192 676.8 372 90.6
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 1.2e-191 673.3 372 90.3
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 2.5e-173 612.5 409 73.8
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 7.4e-170 600.9 409 72.6
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 5.3e-168 594.7 415 70.8
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.5e-167 593.2 409 72.1
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-167 592.0 298 96.0
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.3e-166 590.1 409 71.6
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.7e-166 589.7 409 69.4
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 8.4e-166 587.4 417 70.5
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.1e-165 587.0 410 71.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 2.5e-165 585.9 446 66.1
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 9.3e-165 583.9 413 71.2
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 9.3e-165 583.9 413 71.2
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 7.9e-164 580.9 409 69.4
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 5.1e-163 578.2 412 70.1
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 5.1e-163 578.2 408 70.1
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.5e-162 575.9 394 76.4
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 3.3e-162 575.5 403 71.2
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.7e-161 572.0 403 71.0
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 3.7e-161 572.0 402 70.6
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.1e-160 570.5 402 70.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.2e-159 567.0 411 69.8
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.0e-159 566.2 402 70.1
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 2.6e-159 565.8 401 68.8
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 3.4e-159 565.5 433 65.1
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.3e-158 563.5 415 68.7
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.7e-158 563.1 403 69.7
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 2.2e-158 562.8 411 67.4
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 3.8e-158 562.0 398 70.9
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 3.8e-158 562.0 401 68.6
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 6.5e-158 561.2 413 66.6
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.4e-157 560.1 352 76.4
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 3.2e-157 558.9 401 69.1
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 4.2e-157 558.5 401 68.6
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 5.5e-157 558.1 403 67.7
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 7.2e-157 557.8 408 68.4
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 9.4e-157 557.4 410 68.0
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.2e-156 557.0 383 70.2
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.6e-156 556.6 402 68.2
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 2.7e-156 555.8 349 75.4
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 4.6e-156 555.1 383 69.7
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.6e-156 555.1 409 68.5
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 6.1e-156 554.7 409 68.5
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 7.9e-156 554.3 398 68.1
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 2.3e-155 552.7 380 72.4
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.0e-155 552.4 409 67.7
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 3.9e-155 552.0 361 73.7
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 3.9e-155 552.0 381 70.9
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 3.9e-155 552.0 355 73.2
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 6.7e-155 551.2 413 66.8
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 2.0e-154 549.7 404 68.1
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 3.3e-154 548.9 409 66.5
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 5.7e-154 548.1 373 71.3
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 5.7e-154 548.1 365 72.3
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 7.4e-154 547.7 345 75.1
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.3e-153 547.0 358 72.3
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.3e-153 547.0 425 64.9
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 3.7e-153 545.4 332 77.4
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 6.3e-153 544.7 429 63.2
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 6.3e-153 544.7 367 72.2
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 8.2e-153 544.3 361 73.4
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.1e-152 543.9 367 71.7
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.1e-152 543.9 402 67.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.8e-152 543.1 350 74.9
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 3.1e-152 542.3 409 67.7
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 4.1e-152 542.0 350 73.7
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.3e-152 541.6 404 66.6
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.2e-151 540.4 436 64.2
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 2.6e-151 539.3 348 73.9
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 4.5e-151 538.5 341 74.8
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 4.5e-151 538.5 409 66.3
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 5.9e-151 538.1 404 65.8
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 7.7e-151 537.7 377 70.8
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.0e-150 537.3 403 66.0
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-150 537.0 351 70.9
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.3e-150 537.0 349 73.6
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-150 536.2 341 73.9
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 2.2e-150 536.2 333 75.4
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 2.9e-150 535.8 371 70.1
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 6.5e-150 534.6 372 71.2
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 8.5e-150 534.3 346 74.3
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.1e-149 533.9 349 72.5
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 9.4e-149 530.8 418 66.0
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 9.4e-149 530.8 418 66.0
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-148 530.4 385 68.1
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.6e-148 530.0 403 64.8
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 4.7e-148 528.5 333 73.3
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 2.3e-147 526.2 418 65.6
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 5.1e-147 525.0 336 75.3
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 6.7e-147 524.6 339 72.6
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 5.7e-146 521.5 327 74.0
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.5e-143 513.5 345 69.9
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 4.5e-143 511.9 327 72.5
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 2.9e-142 509.2 297 81.5
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 3.8e-142 508.8 337 72.4
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 5.5e-141 505.0 329 71.1
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 5.5e-141 505.0 315 75.9
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.2e-140 503.8 382 63.4
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-137 493.4 404 62.1
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 9.1e-136 487.6 408 59.1
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 3.2e-133 479.2 283 79.9
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 4.7e-132 475.3 336 65.8
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-130 469.2 324 68.8
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 9.4e-125 451.1 277 75.1
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 6.1e-124 448.4 340 65.6
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.7e-121 440.3 339 63.4
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 6.1e-116 421.8 441 54.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.3e-110 403.3 339 56.9
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.2e-108 397.5 335 58.8
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 1.2e-108 397.5 315 61.6
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 5.2e-107 392.1 262 73.3
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 6.8e-107 391.7 339 61.9
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.8e-100 369.8 305 58.7
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.9e-94 349.4 328 56.7
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.1e-84 317.0 239 67.8
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.8e-83 313.9 188 78.2
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.8e-81 306.2 225 67.1
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-76 290.0 303 52.5
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 9.0e-75 285.0 143 95.1
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 8.1e-68 261.9 157 79.0
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.4e-67 260.4 383 40.5
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 3.0e-62 243.4 275 49.5
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 6.0e-55 219.2 309 42.1
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.9e-54 216.5 235 51.1
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.5e-50 203.0 209 52.2
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 3.7e-44 183.3 272 40.8
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 5.3e-43 179.5 116 70.7
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.9e-42 176.0 146 63.7
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-41 175.3 131 64.1
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-38 164.9 148 59.5
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 2.3e-38 164.1 146 61.6
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 2.3e-38 164.1 146 61.6
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.7e-29 132.1 159 46.5
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.7e-29 132.1 159 46.5
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 6.3e-28 129.4 231 35.9
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 3.1e-19 100.5 173 35.8
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 1.1e-16 92.0 53 73.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 1.1e-16 92.0 53 73.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-12 77.8 51 70.6
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-06 57.0 39 61.5
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 5.2e-06 56.6 45 55.6


User provided reference genes

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