Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 6.9e-298 1026.5 523 100.0
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 2.0e-284 981.9 549 92.2
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 2.6e-276 954.9 551 88.2
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 5.3e-266 920.6 552 85.9
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 7.7e-265 916.8 542 87.1
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 4.7e-262 907.5 550 84.5
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.3e-259 899.4 552 85.3
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 5.9e-257 890.6 542 84.5
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.9e-255 885.6 552 83.5
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 5.5e-255 884.0 552 83.3
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 6.1e-254 880.6 552 83.0
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 4.9e-251 870.9 552 82.1
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 2.9e-235 818.5 515 84.1
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 6.0e-233 810.8 543 77.0
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.0e-216 756.9 402 93.5
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.7e-216 756.1 547 72.0
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 6.2e-214 747.7 544 71.3
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 4.0e-213 745.0 545 70.3
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.5e-212 743.0 546 70.1
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 2.6e-212 742.3 546 70.0
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.7e-211 739.6 546 70.0
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 4.9e-211 738.0 543 70.2
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.9e-210 736.1 555 69.0
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 2.4e-210 735.7 548 70.4
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 4.2e-210 734.9 543 70.3
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 9.3e-210 733.8 548 69.2
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.3e-208 729.9 514 73.0
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.7e-208 729.6 512 73.6
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 2.3e-208 729.2 541 70.1
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 6.6e-208 727.6 556 67.8
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 8.7e-208 727.2 556 67.8
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 6.2e-206 721.1 511 72.2
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.1e-205 720.3 511 72.4
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.8e-205 719.5 547 69.3
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.1e-205 718.8 551 68.1
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 4.0e-205 718.4 544 68.9
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.3e-205 718.0 511 72.0
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 6.9e-205 717.6 511 71.8
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.5e-204 716.5 516 71.7
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 2.0e-204 716.1 547 68.7
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 2.0e-204 716.1 550 68.0
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.6e-204 715.7 550 68.0
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 9.9e-204 713.8 547 68.6
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.9e-204 713.8 511 71.6
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 9.3e-202 707.2 538 68.8
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.2e-201 706.8 486 72.6
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 2.1e-201 706.1 543 68.1
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.0e-200 703.7 514 70.4
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.8e-200 703.0 542 67.2
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.8e-200 703.0 542 67.3
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.8e-200 703.0 486 72.0
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 1.8e-200 703.0 546 67.9
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.3e-200 702.6 544 68.0
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.9e-199 699.5 478 74.1
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 3.3e-199 698.7 541 68.2
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.3e-199 698.7 557 65.5
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 2.1e-198 696.0 506 70.6
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.8e-198 695.7 543 67.0
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.7e-198 695.3 516 69.8
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 6.2e-198 694.5 545 66.6
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 6.9e-197 691.0 523 67.7
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 6.9e-197 691.0 545 66.6
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 6.9e-197 691.0 527 68.7
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 9.0e-197 690.6 544 66.5
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.2e-196 690.3 545 66.4
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 1.3e-195 686.8 539 66.8
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.7e-195 686.4 546 66.1
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 8.4e-195 684.1 555 65.2
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 8.4e-195 684.1 544 65.6
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 2.4e-194 682.6 517 68.1
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 4.2e-194 681.8 516 68.0
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 7.1e-194 681.0 545 65.5
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 7.1e-194 681.0 548 66.8
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.6e-193 679.9 522 67.6
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.6e-193 679.9 549 65.4
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 2.1e-193 679.5 535 66.2
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 4.6e-193 678.3 523 68.3
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.0e-192 677.2 548 64.6
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 2.3e-192 676.0 544 64.5
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.3e-192 676.0 517 67.5
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 2.3e-192 676.0 516 68.0
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 1.5e-191 673.3 516 68.2
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.5e-191 673.3 534 65.5
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 9.6e-191 670.6 516 67.6
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 2.8e-190 669.1 546 64.5
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 1.4e-189 666.8 536 65.7
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 5.8e-188 661.4 487 70.4
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 7.6e-188 661.0 507 67.9
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 8.4e-187 657.5 507 67.7
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 9.3e-186 654.1 506 67.6
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.1e-184 648.3 545 63.9
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.7e-184 647.5 553 62.2
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 8.7e-184 647.5 548 62.4
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 2.5e-183 646.0 558 63.1
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.6e-182 643.3 551 61.0
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.8e-182 642.5 523 64.8
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 2.8e-182 642.5 556 61.9
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 4.8e-182 641.7 537 62.2
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.1e-181 640.6 632 56.3
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.4e-181 640.2 552 60.7
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.1e-181 639.0 470 67.4
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 6.9e-181 637.9 532 63.9
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 9.0e-181 637.5 528 63.4
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.4e-180 635.6 552 60.0
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 3.4e-180 635.6 536 62.7
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 3.4e-180 635.6 536 62.7
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 4.5e-180 635.2 404 76.2
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 7.6e-180 634.4 554 61.6
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 6.5e-179 631.3 547 61.4
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 5.5e-178 628.2 517 63.8
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 9.3e-178 627.5 505 66.1
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 7.9e-177 624.4 547 60.9
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 3.0e-176 622.5 530 61.9
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.5e-175 620.2 554 60.6
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.5e-175 619.4 518 64.5
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 9.7e-175 617.5 487 66.3
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 2.2e-174 616.3 462 68.2
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 2.9e-171 605.9 541 60.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 1.5e-167 593.6 537 59.2
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 9.7e-167 590.9 534 60.9
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 5.9e-156 555.1 553 54.6
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 5.0e-155 552.0 472 61.2
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 1.2e-151 540.8 548 55.3
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.2e-146 522.7 511 55.4
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.0e-144 517.7 545 54.1
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 4.8e-142 508.8 556 51.6
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 1.0e-139 501.1 495 56.6
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.9e-138 496.9 523 55.8
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 3.6e-137 492.7 554 51.1
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 5.0e-131 472.2 404 64.6
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 1.2e-127 461.1 364 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 9.2e-125 451.4 572 46.9
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.6e-121 440.7 538 47.2
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 2.1e-121 440.3 430 57.9
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 5.8e-119 432.2 484 51.0
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.9e-117 427.2 352 65.6
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 1.9e-117 427.2 551 47.0
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 5.0e-115 419.1 374 61.0
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 8.1e-97 358.6 389 55.0
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.8e-89 333.6 306 54.2
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 3.9e-83 313.2 635 35.7
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 2.6e-79 300.4 598 37.0
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.1e-72 278.5 318 52.5
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.2e-63 248.4 295 49.5
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 1.4e-56 224.9 163 75.5
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.4e-53 214.9 459 31.8
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 3.6e-52 210.3 225 56.0
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.5e-45 187.6 91 95.6
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.6e-44 184.9 118 79.7
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 4.7e-44 183.3 490 30.8
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 2.8e-41 174.1 417 31.7
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.1e-40 172.2 96 80.2
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.6e-39 167.5 109 79.8
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 4.2e-37 160.2 516 30.0
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 2.2e-33 147.9 438 28.5
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.6e-28 131.7 143 57.3
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 4.0e-27 127.1 157 54.8
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 7.0e-24 116.3 169 42.0
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 8.6e-22 109.4 79 63.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.2e-18 99.0 160 40.0
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 1.3e-17 95.5 157 38.9
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.1e-13 82.4 40 90.0
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 2.8e-12 77.8 51 74.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.0e-11 75.9 48 68.8
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.8e-11 75.1 40 80.0
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 5.4e-08 63.5 33 75.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 7.0e-08 63.2 32 81.2
MD09G1146400 Malus domestica HOM05D001610 ORTHO05D001585 1.2e-07 62.4 321 21.5


User provided reference genes

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