Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 9.0e-48 193.4 104 100.0
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.4e-45 185.3 104 95.2
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 8.7e-43 176.8 104 91.3
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-42 176.4 105 92.4
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-42 176.4 105 92.4
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.1e-42 176.4 105 92.4
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 5.6e-42 174.1 107 88.8
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 3.6e-41 171.4 105 89.5
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 8.1e-41 170.2 107 87.9
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 8.1e-41 170.2 107 87.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.1e-40 169.9 105 88.6
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 5.3e-40 167.5 107 86.0
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 9.0e-40 166.8 105 87.6
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 6.4e-38 160.6 107 83.2
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 6.4e-38 160.6 107 83.2
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 5.8e-31 137.5 105 74.3
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 5.8e-31 137.5 105 74.3
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 5.8e-31 137.5 105 74.3
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-30 136.3 107 74.8
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 8.4e-30 133.7 105 72.4
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-29 133.3 105 74.3
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 4.2e-29 131.3 106 72.6
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.2e-28 129.8 106 72.6
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.5e-28 128.3 106 71.7
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.9e-28 127.1 112 67.9
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.0e-27 125.2 106 70.8
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 3.9e-27 124.8 107 69.2
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 1.9e-26 122.5 107 68.2
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 1.9e-26 122.5 107 69.2
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 9.6e-26 120.2 110 64.5
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.6e-25 119.4 106 66.0
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 8.2e-25 117.1 107 65.4
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 1.0e-22 110.2 107 63.6
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 1.6e-20 102.8 107 59.8
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.6e-20 102.8 107 60.7
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 5.1e-19 97.8 107 57.9
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 6.7e-19 97.4 111 55.0
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 8.7e-19 97.1 107 59.8
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.1e-18 96.7 113 57.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.9e-18 95.9 108 54.6
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.9e-18 95.9 108 54.6
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.6e-17 92.8 109 54.1
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.2e-17 92.4 101 54.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.2e-17 92.4 106 56.6
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.8e-17 91.3 101 53.5
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 6.3e-17 90.9 106 55.7
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.4e-16 89.7 109 55.0
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.4e-16 89.7 106 54.7
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.4e-16 89.0 108 58.3
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.4e-16 89.0 108 58.3
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 5.3e-16 87.8 106 54.7
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 5.3e-16 87.8 111 54.1
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 6.9e-16 87.4 107 51.4
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 9.0e-16 87.0 110 51.8
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.2e-15 86.7 105 56.2
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.0e-15 85.9 107 55.1
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 2.6e-15 85.5 101 52.5
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 2.6e-15 85.5 106 51.9
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.4e-15 85.1 108 50.9
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 3.4e-15 85.1 106 51.9
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 3.4e-15 85.1 107 54.2
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 5.9e-15 84.3 108 53.7
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 5.9e-15 84.3 105 52.4
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 7.7e-15 84.0 107 53.3
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.3e-14 83.2 109 55.0
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.7e-14 82.8 107 54.2
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.2e-14 82.4 109 48.6
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.2e-14 82.4 106 53.8
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.9e-14 82.0 106 53.8
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.9e-14 82.0 108 52.8
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 5.0e-14 81.3 101 47.5
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 5.0e-14 81.3 104 50.0
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 5.0e-14 81.3 110 50.9
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 5.0e-14 81.3 109 52.3
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 6.5e-14 80.9 116 50.0
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 8.5e-14 80.5 108 54.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.1e-13 80.1 111 52.3
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 1.1e-13 80.1 106 54.7
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 50.9
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 1.9e-13 79.3 103 52.4
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.5e-13 79.0 111 55.0
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 2.5e-13 79.0 106 50.0
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 3.2e-13 78.6 107 48.6
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.2e-13 78.6 108 50.0
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 4.2e-13 78.2 107 47.7
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 5.5e-13 77.8 105 49.5
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 7.2e-13 77.4 108 50.0
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 7.2e-13 77.4 107 52.3
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 9.4e-13 77.0 107 47.7
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.4e-13 77.0 107 49.5
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 9.4e-13 77.0 109 45.9
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.2e-12 76.6 105 49.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.2e-12 76.6 104 50.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.2e-12 76.6 109 47.7
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.2e-12 76.6 104 50.0
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.6e-12 76.3 103 48.5
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 49.5
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.6e-12 76.3 107 49.5
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.6e-12 76.3 107 49.5
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 2.1e-12 75.9 107 46.7
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 2.7e-12 75.5 109 47.7
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 3.6e-12 75.1 111 48.6
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 6.1e-12 74.3 110 50.9
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 6.1e-12 74.3 98 49.0
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 6.1e-12 74.3 106 50.0
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.4e-11 73.2 109 46.8
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.8e-11 72.8 105 46.7
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.8e-11 72.8 109 46.8
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.3e-11 72.4 107 49.5
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.0e-11 72.0 106 49.1
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.0e-11 72.0 106 49.1
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.9e-11 71.6 104 49.0
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 5.1e-11 71.2 109 45.0
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 6.7e-11 70.9 108 49.1
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 8.8e-11 70.5 102 47.1
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.8e-11 70.5 106 48.1
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.8e-11 70.5 106 48.1
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.1e-10 70.1 105 46.7
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.0e-10 69.3 41 80.5
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 2.5e-10 68.9 106 46.2
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 3.3e-10 68.6 106 45.3
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.3e-10 68.2 89 51.7
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 5.7e-10 67.8 63 60.3
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 5.7e-10 67.8 115 48.7
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 5.7e-10 67.8 106 45.3
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 7.4e-10 67.4 109 44.0
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.7e-09 66.2 112 44.6
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.2e-09 65.9 108 45.4
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 2.8e-09 65.5 95 51.6
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 8.2e-09 63.9 112 44.6
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 8.2e-09 63.9 108 46.3
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.1e-08 63.5 108 46.3
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.1e-08 63.5 106 41.5
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 6.9e-08 60.8 113 43.4
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 6.9e-08 60.8 108 45.4
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 9.1e-08 60.5 107 42.1
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 9.1e-08 60.5 41 75.6
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 9.1e-08 60.5 106 45.3
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 9.1e-08 60.5 110 40.9
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.2e-07 60.1 108 43.5
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.5e-07 59.7 96 47.9
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 2.6e-07 58.9 105 41.9
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 4.5e-07 58.2 108 44.4
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 7.7e-07 57.4 107 40.2
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 1.7e-06 56.2 116 38.8
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 2.9e-06 55.5 83 44.6
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 3.8e-06 55.1 38 71.1
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.8e-06 55.1 107 42.1
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 8.5e-06 53.9 108 38.0


User provided reference genes

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