Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 4.6e-145 518.1 304 100.0
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 3.1e-141 505.4 305 97.4
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 6.1e-137 491.1 302 91.7
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 6.3e-134 481.1 305 84.6
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.4e-133 479.9 304 89.5
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 5.3e-133 478.0 304 88.8
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.2e-132 476.9 304 89.1
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 2.9e-131 472.2 304 87.8
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 5.0e-131 471.5 304 88.2
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 5.0e-131 471.5 304 87.8
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 5.0e-131 471.5 304 88.2
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 5.0e-131 471.5 304 88.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 6.5e-131 471.1 304 88.2
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 6.5e-131 471.1 304 88.2
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 4.7e-129 464.9 305 87.5
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 6.1e-129 464.5 305 87.5
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 6.1e-129 464.5 305 87.5
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 8.0e-129 464.2 305 87.2
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.8e-128 463.0 303 87.8
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 4.4e-127 458.4 306 85.9
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.4e-117 426.0 272 89.7
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.4e-112 410.2 273 85.0
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 7.0e-109 397.9 305 79.3
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.6e-108 396.7 275 73.1
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.3e-107 392.9 251 80.5
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 5.5e-106 388.3 273 70.7
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 2.1e-105 386.3 275 71.6
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 4.7e-105 385.2 272 70.2
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 8.0e-105 384.4 274 72.6
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.0e-104 384.0 271 69.7
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 1.0e-104 384.0 261 73.2
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.4e-104 383.6 271 70.8
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.8e-104 383.3 274 69.3
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 2.3e-104 382.9 271 71.2
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.3e-104 382.9 286 67.5
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 3.0e-104 382.5 267 70.8
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.0e-104 382.5 266 71.8
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.0e-104 382.5 266 71.8
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 3.0e-104 382.5 266 71.8
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 4.0e-104 382.1 271 69.0
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 4.0e-104 382.1 267 70.8
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 6.8e-104 381.3 274 69.0
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 8.9e-104 380.9 271 69.4
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 1.2e-103 380.6 276 68.8
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 1.5e-103 380.2 274 69.3
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.5e-103 380.2 270 70.0
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.0e-103 379.8 272 69.9
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 2.0e-103 379.8 271 69.7
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 2.6e-103 379.4 271 69.7
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.4e-103 379.0 280 73.9
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 4.4e-103 378.6 274 68.6
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 7.5e-103 377.9 276 68.5
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 9.8e-103 377.5 276 69.9
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 2.2e-102 376.3 271 69.4
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 2.2e-102 376.3 275 73.5
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 2.8e-102 375.9 265 81.5
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 3.7e-102 375.6 265 69.8
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 6.3e-102 374.8 271 71.6
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 8.3e-102 374.4 265 70.6
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 8.3e-102 374.4 274 67.9
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.1e-101 374.0 275 67.3
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 1.4e-101 373.6 270 71.1
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 1.8e-101 373.2 301 64.8
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 2.4e-101 372.9 265 71.3
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.1e-101 372.1 272 78.3
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 5.4e-101 371.7 267 78.7
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 5.4e-101 371.7 265 71.3
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 5.4e-101 371.7 273 66.7
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 7.0e-101 371.3 265 71.3
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 7.0e-101 371.3 270 71.1
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 7.0e-101 371.3 264 70.8
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.2e-100 370.5 272 71.0
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.6e-100 370.2 264 68.2
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.0e-100 369.8 276 67.8
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 4.5e-100 368.6 275 72.7
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 4.5e-100 368.6 271 67.2
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 4.5e-100 368.6 273 69.2
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 5.9e-100 368.2 276 68.8
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 7.8e-100 367.9 301 62.5
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 7.8e-100 367.9 271 69.0
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.0e-99 367.5 267 68.2
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.0e-99 367.5 286 65.0
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.3e-99 367.1 272 71.7
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 2.3e-99 366.3 272 71.7
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 2.3e-99 366.3 281 68.7
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.3e-99 366.3 276 67.0
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 2.3e-99 366.3 264 67.8
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 2.9e-99 365.9 271 68.6
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.9e-99 365.9 266 67.3
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 5.0e-99 365.2 272 67.3
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 5.0e-99 365.2 264 67.4
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.0e-99 365.2 270 67.0
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 6.6e-99 364.8 270 71.5
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 6.6e-99 364.8 270 67.0
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 8.6e-99 364.4 275 67.6
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.1e-98 364.0 275 65.5
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.1e-98 364.0 272 67.3
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.1e-98 364.0 269 74.3
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.5e-98 362.8 273 66.7
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.3e-98 362.5 264 67.0
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.6e-98 361.7 285 64.6
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 3.6e-97 359.0 265 69.8
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 4.7e-97 358.6 285 63.9
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 4.7e-97 358.6 264 67.0
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 4.7e-97 358.6 266 68.0
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.0e-96 357.5 289 64.0
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 1.0e-96 357.5 273 64.5
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 1.4e-96 357.1 271 64.9
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.4e-96 357.1 269 70.6
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.4e-96 357.1 266 68.0
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.3e-96 356.3 266 67.7
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 3.1e-96 355.9 273 64.5
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 6.8e-96 354.8 271 65.7
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 6.8e-96 354.8 274 65.3
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 8.9e-96 354.4 291 61.5
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 2.0e-95 353.2 275 64.4
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.0e-95 353.2 274 64.6
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 5.8e-95 351.7 268 64.6
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.7e-94 350.1 286 62.9
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.7e-94 350.1 262 65.3
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 4.9e-94 348.6 266 64.7
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 4.6e-92 342.0 273 63.0
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 4.6e-92 342.0 268 61.2
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 7.8e-92 341.3 276 62.3
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.3e-91 340.5 317 58.0
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.0e-91 339.3 270 64.8
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.0e-91 339.3 270 64.1
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 6.6e-91 338.2 268 60.8
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.9e-90 336.7 268 60.8
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 2.3e-88 329.7 272 61.4
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.2e-86 323.2 231 68.4
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.3e-83 313.9 275 58.5
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.5e-82 310.5 271 56.5
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 4.7e-81 305.4 294 59.2
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.3e-78 297.4 222 66.2
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.9e-74 283.5 264 52.7
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.2e-71 274.2 199 70.4
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 8.4e-70 268.1 412 44.2
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.9e-69 266.9 280 50.0
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 2.7e-68 263.1 192 68.8
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 6.6e-67 258.5 268 57.1
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 2.1e-65 253.4 202 62.9
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.6e-65 252.7 262 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 6.2e-65 251.9 278 49.6
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 1.1e-64 251.1 192 65.6
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.1e-64 251.1 190 68.9
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-63 247.7 199 63.3
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.2e-63 247.7 243 52.3
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.1e-61 241.1 253 54.2
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 3.6e-57 226.1 147 72.8
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 1.9e-50 203.8 185 56.8
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 3.4e-47 193.0 258 41.5
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 3.3e-34 149.8 126 64.3
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.4e-32 143.7 128 58.6
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 6.7e-27 125.6 76 72.4
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 8.8e-27 125.2 76 72.4
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.0e-26 124.0 76 73.7
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.9e-21 107.5 101 57.4
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 2.1e-20 104.0 108 55.6
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 2.7e-20 103.6 179 33.0
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 2.0e-15 87.4 191 28.3
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.6e-10 70.5 92 40.2
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 2.8e-09 67.0 38 94.7


User provided reference genes

Program Settings