Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 5.5e-187 657.5 338 100.0
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 5.0e-172 607.8 340 92.4
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 2.8e-159 565.5 342 87.7
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 2.2e-156 555.8 341 86.2
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 1.8e-153 546.2 340 82.6
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 1.8e-153 546.2 342 83.9
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 8.8e-153 543.9 342 83.3
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 1.5e-152 543.1 340 82.1
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 3.8e-148 528.5 342 81.0
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 4.2e-147 525.0 341 79.5
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 4.2e-147 525.0 341 79.5
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 3.4e-136 488.8 345 76.5
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 3.7e-127 458.8 343 72.9
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 1.0e-113 414.1 347 64.6
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 4.3e-99 365.5 349 60.7
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 9.5e-99 364.4 348 59.8
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 3.4e-96 355.9 345 57.4
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 5.8e-96 355.1 345 57.4
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 1.3e-95 354.0 347 57.1
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 9.2e-94 347.8 349 55.9
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 2.7e-93 346.3 343 58.0
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 7.8e-93 344.7 343 58.3
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 1.7e-92 343.6 281 64.8
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 8.6e-92 341.3 349 55.3
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 1.9e-91 340.1 354 54.8
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 2.5e-91 339.7 345 57.7
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 3.3e-91 339.3 342 57.3
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 7.3e-91 338.2 281 63.3
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 1.2e-90 337.4 343 56.9
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.6e-90 337.0 349 56.2
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 2.8e-90 336.3 313 58.5
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 3.6e-90 335.9 342 55.6
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 6.2e-90 335.1 318 59.4
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 8.1e-90 334.7 342 56.4
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 1.8e-89 333.6 311 58.5
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 1.8e-89 333.6 342 56.7
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 3.1e-89 332.8 342 56.7
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 5.2e-89 332.0 340 56.5
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 6.9e-89 331.6 347 56.5
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 8.9e-89 331.3 357 55.5
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 8.9e-89 331.3 357 55.5
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.5e-88 330.5 347 55.9
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 2.0e-88 330.1 346 56.4
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 3.4e-88 329.3 345 56.5
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 3.4e-88 329.3 350 54.9
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 5.8e-88 328.6 352 55.7
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 9.9e-88 327.8 345 53.3
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 1.3e-87 327.4 311 60.1
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 1.7e-87 327.0 273 64.5
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 4.9e-87 325.5 349 55.0
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 4.9e-87 325.5 350 55.7
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 1.1e-86 324.3 355 53.8
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 1.1e-86 324.3 351 54.4
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 2.4e-86 323.2 354 53.7
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 3.2e-86 322.8 349 54.7
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 3.2e-86 322.8 346 55.2
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 5.4e-86 322.0 354 52.5
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 2.7e-85 319.7 341 55.1
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 4.6e-85 318.9 352 52.8
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 4.6e-85 318.9 276 62.7
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 1.0e-84 317.8 278 61.5
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 1.7e-84 317.0 348 52.9
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 8.7e-84 314.7 273 60.1
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 8.7e-84 314.7 364 51.4
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 1.1e-83 314.3 332 51.8
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 3.3e-83 312.8 349 51.6
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 7.3e-83 311.6 327 54.1
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 9.6e-83 311.2 348 54.3
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.8e-82 309.7 347 52.4
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 3.6e-82 309.3 344 52.0
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 1.4e-81 307.4 357 51.0
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 2.6e-80 303.1 271 58.7
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 2.6e-80 303.1 346 52.3
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 3.4e-80 302.8 347 52.4
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 5.8e-80 302.0 322 55.6
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 1.3e-79 300.8 319 54.5
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.3e-79 300.8 316 55.1
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 4.9e-79 298.9 277 55.2
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 6.4e-79 298.5 353 51.8
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 4.2e-78 295.8 306 55.2
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 6.7e-76 288.5 319 52.7
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 1.9e-75 287.0 348 48.6
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 2.8e-74 283.1 352 48.9
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 3.1e-73 279.6 325 51.4
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 1.2e-72 277.7 301 52.5
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.9e-70 270.4 276 55.4
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 2.4e-65 253.4 315 48.6
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 3.8e-63 246.1 326 45.7
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 3.7e-58 229.6 316 43.7
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 8.2e-58 228.4 351 40.7
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 2.6e-56 223.4 207 57.5
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.2e-53 214.5 253 53.4
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 4.6e-53 212.6 129 78.3
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 2.4e-49 200.3 232 54.7
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 1.0e-44 184.9 135 68.1
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 1.7e-42 177.6 185 52.4
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 2.8e-42 176.8 269 37.9
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 1.1e-38 164.9 205 50.7
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.2e-32 144.8 123 59.3
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 7.2e-30 135.6 102 64.7
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 7.0e-25 119.0 265 34.0
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 2.0e-24 117.5 273 35.9
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 5.0e-23 112.8 115 53.0
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.5e-19 101.3 257 29.6
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 6.3e-18 95.9 108 51.9
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 1.0e-15 88.6 283 26.5
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 3.5e-08 63.5 291 23.7


User provided reference genes

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