Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 6.7e-249 863.6 455 100.0
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 5.6e-227 790.8 459 91.1
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 6.6e-204 714.1 447 85.9
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 5.4e-190 667.9 470 79.4
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 3.4e-168 595.5 465 70.5
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 4.8e-138 495.4 516 61.6
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 7.0e-137 491.5 469 65.9
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 1.5e-126 457.2 580 54.8
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 1.5e-126 457.2 580 54.8
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 4.2e-126 455.7 582 55.0
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 4.2e-126 455.7 580 54.5
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 2.1e-125 453.4 446 58.5
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 3.6e-117 426.0 634 49.2
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 1.7e-111 407.1 462 58.9
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 2.3e-79 300.4 466 42.7
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 2.3e-79 300.4 478 44.6
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 1.2e-77 294.7 485 44.7
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 1.7e-74 284.3 475 44.0
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 3.8e-74 283.1 473 43.6
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.1e-73 281.6 473 43.8
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 1.4e-73 281.2 485 42.1
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 2.1e-72 277.3 504 41.1
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 1.9e-70 270.8 411 44.3
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 3.3e-70 270.0 484 40.3
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 9.6e-70 268.5 525 37.9
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 3.6e-69 266.5 479 41.1
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 4.0e-68 263.1 473 42.7
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 2.6e-67 260.4 489 40.7
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 5.8e-67 259.2 484 39.0
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 1.7e-66 257.7 556 36.5
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 3.8e-66 256.5 465 41.7
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.6e-64 251.1 477 39.4
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 4.3e-62 243.0 493 38.7
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 4.3e-62 243.0 488 38.5
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 3.7e-61 240.0 519 38.2
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 4.8e-61 239.6 481 40.1
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 8.1e-61 238.8 534 37.1
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 8.1e-61 238.8 517 36.0
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 4.0e-60 236.5 531 35.8
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 4.5e-59 233.0 471 38.0
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 7.6e-59 232.3 301 47.5
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 1.3e-58 231.5 519 37.0
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 2.2e-58 230.7 493 37.3
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 8.4e-58 228.8 517 38.3
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 1.9e-57 227.6 462 38.7
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 9.3e-57 225.3 486 38.9
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 4.6e-56 223.0 556 35.6
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 1.0e-55 221.9 484 39.3
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.3e-55 221.5 420 37.6
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 1.3e-55 221.5 538 36.2
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 1.3e-55 221.5 467 37.9
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.9e-55 219.9 420 37.4
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 8.7e-55 218.8 515 35.9
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 1.9e-54 217.6 483 35.8
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 2.5e-54 217.2 485 38.1
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 5.6e-54 216.1 476 37.6
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.1e-52 211.8 457 36.1
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 3.1e-52 210.3 491 36.5
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 1.2e-51 208.4 373 39.9
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 1.2e-51 208.4 452 36.7
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 1.2e-51 208.4 470 36.4
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 3.4e-51 206.8 352 41.8
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 5.8e-51 206.1 560 33.2
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.7e-50 204.5 422 37.7
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 2.2e-50 204.1 522 35.1
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 4.9e-50 203.0 392 40.3
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 4.9e-50 203.0 357 40.1
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.4e-49 201.4 552 33.3
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 4.2e-49 199.9 566 32.0
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 7.9e-48 195.7 500 35.2
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.3e-47 194.9 450 36.2
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.3e-47 194.9 593 32.0
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 2.3e-47 194.1 546 32.4
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 3.0e-47 193.7 507 33.1
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 8.7e-47 192.2 466 35.4
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 3.3e-46 190.3 523 33.8
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 4.3e-46 189.9 357 38.7
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 7.4e-46 189.1 435 38.4
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 1.3e-45 188.3 565 32.2
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.6e-45 188.0 502 33.3
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 2.2e-45 187.6 568 32.9
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 3.7e-45 186.8 482 36.7
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 6.3e-45 186.0 399 39.1
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 1.4e-44 184.9 474 35.4
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 1.8e-44 184.5 530 32.3
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 1.8e-44 184.5 432 38.0
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 2.4e-44 184.1 516 34.7
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 3.1e-44 183.7 548 32.5
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 6.9e-44 182.6 332 38.6
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 4.5e-43 179.9 389 36.8
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 5.9e-43 179.5 433 34.2
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 5.9e-43 179.5 353 38.8
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 7.7e-43 179.1 543 32.2
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.7e-42 177.9 432 33.3
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 2.2e-42 177.6 468 33.8
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 2.9e-42 177.2 524 32.6
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 1.4e-39 168.3 506 34.4
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 2.5e-38 164.1 528 30.3
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 8.2e-37 159.1 365 34.8
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 1.8e-36 157.9 589 31.4
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 1.5e-35 154.8 325 34.8
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 2.0e-35 154.5 437 30.4
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 2.6e-35 154.1 481 33.3
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 2.1e-32 144.4 406 33.0
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.8e-28 131.3 264 43.9
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 3.5e-27 127.1 480 28.8
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 1.0e-26 125.6 337 32.9
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 5.0e-26 123.2 389 30.6
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 6.1e-24 116.3 180 38.9
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.0e-23 115.5 450 30.7
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 7.4e-22 109.4 522 29.7
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.4e-20 105.1 165 41.2
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 9.1e-20 102.4 203 36.0
BcaB04g18327 Brassica carinata HOM05D000073 ORTHO05D000033 9.4e-17 92.4 99 57.6
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 5.3e-12 76.6 108 42.6
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 4.5e-11 73.6 167 34.1
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 5.5e-09 66.6 63 49.2


User provided reference genes

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