Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G34240 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 3.6e-97 358.2 176 100.0
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 6.9e-16 88.2 126 38.9
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 1.2e-15 87.4 129 39.5
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 2.0e-15 86.7 132 37.1
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 2.0e-15 86.7 132 36.4
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 2.0e-15 86.7 132 36.4
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 2.6e-15 86.3 132 36.4
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 2.6e-15 86.3 132 36.4
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 3.4e-15 85.9 132 37.1
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 5.8e-15 85.1 132 37.1
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 5.8e-15 85.1 132 38.6
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 9.9e-15 84.3 132 36.4
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 1.3e-14 84.0 132 36.4
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 1.7e-14 83.6 132 37.9
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 2.9e-14 82.8 133 36.8
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 4.9e-14 82.0 132 35.6
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 4.9e-14 82.0 132 35.6
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 6.4e-14 81.6 132 36.4
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 6.4e-14 81.6 128 35.2
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 1.4e-13 80.5 128 34.4
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 1.4e-13 80.5 132 36.4
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 1.9e-13 80.1 132 34.1
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 3.2e-13 79.3 132 34.1
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 3.2e-13 79.3 132 35.6
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 3.2e-13 79.3 132 35.6
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 3.2e-13 79.3 132 35.6
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 3.2e-13 79.3 128 33.6
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 3.2e-13 79.3 132 33.3
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 4.2e-13 79.0 127 35.4
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 4.2e-13 79.0 132 34.1
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 4.2e-13 79.0 132 33.3
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 5.4e-13 78.6 132 37.1
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 5.4e-13 78.6 132 35.6
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 5.4e-13 78.6 132 33.3
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 7.1e-13 78.2 132 34.8
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 7.1e-13 78.2 132 33.3
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 7.1e-13 78.2 132 33.3
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 9.3e-13 77.8 132 31.8
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 9.3e-13 77.8 132 34.1
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 1.2e-12 77.4 133 36.8
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 1.2e-12 77.4 133 36.1
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 1.2e-12 77.4 132 34.1
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 1.6e-12 77.0 128 35.2
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 1.6e-12 77.0 128 35.2
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 1.6e-12 77.0 128 35.2
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 1.6e-12 77.0 128 35.2
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 1.6e-12 77.0 132 34.8
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 1.6e-12 77.0 132 32.6
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.6e-12 77.0 132 33.3
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.1e-12 76.6 132 31.8
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.1e-12 76.6 132 34.8
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 2.1e-12 76.6 132 34.1
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.1e-12 76.6 132 31.8
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 2.1e-12 76.6 132 36.4
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 2.1e-12 76.6 132 33.3
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 2.1e-12 76.6 132 34.1
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 2.7e-12 76.3 132 33.3
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 2.7e-12 76.3 132 32.6
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.5e-12 75.9 132 31.8
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 4.6e-12 75.5 132 32.6
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 4.6e-12 75.5 132 32.6
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 4.6e-12 75.5 132 32.6
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 4.6e-12 75.5 132 32.6
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 4.6e-12 75.5 132 34.1
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 4.6e-12 75.5 132 33.3
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 6.0e-12 75.1 134 33.6
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 6.0e-12 75.1 132 33.3
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 6.0e-12 75.1 132 34.1
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 7.9e-12 74.7 132 35.6
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 7.9e-12 74.7 132 34.8
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 7.9e-12 74.7 132 34.8
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 7.9e-12 74.7 132 31.8
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 7.9e-12 74.7 132 31.8
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 7.9e-12 74.7 132 31.8
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 7.9e-12 74.7 132 31.8
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 7.9e-12 74.7 132 31.8
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 1.0e-11 74.3 132 33.3
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 1.0e-11 74.3 132 31.8
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.3e-11 73.9 132 32.6
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 1.8e-11 73.6 135 34.1
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 2.3e-11 73.2 132 31.8
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 2.3e-11 73.2 132 32.6
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 3.0e-11 72.8 132 33.3
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 3.0e-11 72.8 132 33.3
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 3.0e-11 72.8 132 35.6
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 3.9e-11 72.4 132 32.6
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 3.9e-11 72.4 135 34.1
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 6.7e-11 71.6 132 34.1
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 6.7e-11 71.6 132 31.8
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.1e-10 70.9 126 31.7
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 1.1e-10 70.9 129 32.6
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 1.5e-10 70.5 132 31.8
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 1.9e-10 70.1 132 33.3
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 1.9e-10 70.1 132 34.1
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 2.5e-10 69.7 132 35.6
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 4.3e-10 68.9 132 33.3
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 4.3e-10 68.9 132 35.6
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 5.6e-10 68.6 132 30.3
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 5.6e-10 68.6 132 33.3
Lsat_1_v5_gn_2_118360 Lactuca sativa HOM05D003602 ORTHO05D020334 7.4e-10 68.2 134 33.6
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 9.6e-10 67.8 132 34.1
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 9.6e-10 67.8 135 31.1
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 1.6e-09 67.0 131 32.8
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 3.7e-09 65.9 132 33.3
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 4.8e-09 65.5 131 32.1
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 6.2e-09 65.1 133 33.8
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 8.1e-09 64.7 132 33.3
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 1.1e-08 64.3 132 31.8
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 1.4e-08 63.9 135 28.9
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 2.4e-08 63.2 132 32.6
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 9.0e-08 61.2 136 29.4
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.5e-07 60.5 126 29.4
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 2.0e-07 60.1 54 44.4
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 2.6e-07 59.7 126 28.6
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 2.6e-07 59.7 126 28.6
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 3.4e-07 59.3 132 31.1
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 4.5e-07 58.9 132 28.8
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 9.9e-07 57.8 61 44.3
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 1.3e-06 57.4 54 48.1
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.3e-06 57.4 54 46.3
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 1.3e-06 57.4 54 46.3
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 2.2e-06 56.6 126 26.2
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 2.2e-06 56.6 126 29.4
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 2.9e-06 56.2 54 44.4
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 4.9e-06 55.5 40 60.0
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 4.9e-06 55.5 61 45.9
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 6.4e-06 55.1 45 60.0
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 6.4e-06 55.1 131 27.5


User provided reference genes

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