Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 6.9e-188 661.0 476 100.0
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 2.0e-171 606.3 476 94.3
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 4.5e-163 578.6 474 91.8
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 1.6e-160 570.1 473 92.0
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 2.7e-147 526.2 474 86.7
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 6.6e-146 521.5 473 85.6
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 1.3e-141 507.3 475 85.1
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 1.4e-140 503.8 475 83.4
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 1.4e-140 503.8 475 83.4
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 1.6e-139 500.4 475 83.8
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 6.0e-139 498.4 475 81.9
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 7.8e-139 498.0 475 82.1
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 3.9e-138 495.7 465 84.7
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 5.0e-138 495.4 465 84.7
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 3.1e-135 486.1 465 83.4
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 5.1e-90 335.9 212 82.1
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.8e-72 276.9 456 56.8
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 5.0e-69 266.2 461 47.3
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 4.2e-68 263.1 461 60.1
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 4.2e-68 263.1 462 50.4
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.8e-63 247.7 476 58.0
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 4.1e-63 246.5 475 38.1
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 2.0e-62 244.2 462 56.3
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 1.7e-61 241.1 460 58.3
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 5.0e-61 239.6 465 56.8
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.5e-60 237.3 464 43.8
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 5.5e-60 236.1 454 53.5
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 6.1e-59 232.6 454 53.1
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 1.0e-58 231.9 492 55.7
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.4e-58 231.5 452 60.2
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 3.0e-58 230.3 460 52.8
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 5.2e-58 229.6 488 58.2
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 5.2e-58 229.6 446 58.1
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 1.2e-57 228.4 454 54.0
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 2.6e-57 227.3 465 54.8
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 2.6e-57 227.3 457 52.7
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 1.7e-56 224.6 456 43.6
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.7e-56 224.6 463 59.0
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 6.3e-56 222.6 463 56.8
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 6.3e-56 222.6 463 56.4
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 6.3e-56 222.6 454 53.7
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 3.1e-55 220.3 473 56.9
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 3.1e-55 220.3 454 53.1
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.2e-54 218.4 454 57.7
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.7e-53 214.5 451 56.1
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 3.2e-52 210.3 458 49.6
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 7.2e-52 209.1 463 56.6
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 9.4e-52 208.8 469 56.7
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 1.2e-51 208.4 462 56.1
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 1.2e-51 208.4 460 57.4
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.8e-50 204.5 462 51.3
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 3.4e-49 200.3 453 58.3
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 2.2e-48 197.6 438 57.3
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 3.7e-48 196.8 464 45.3
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 3.7e-48 196.8 477 32.1
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 4.8e-48 196.4 342 53.8
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 1.1e-47 195.3 471 55.8
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 3.1e-47 193.7 462 42.9
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 1.7e-45 188.0 343 54.5
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 5.0e-45 186.4 444 57.2
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 7.2e-44 182.6 351 63.2
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 6.1e-43 179.5 476 48.5
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 1.4e-42 178.3 454 56.8
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 5.2e-42 176.4 344 50.0
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.5e-41 174.9 458 40.2
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 2.2e-40 171.0 457 53.0
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 4.9e-40 169.9 471 42.7
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 1.4e-39 168.3 458 52.2
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 1.8e-39 167.9 446 42.6
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 1.7e-37 161.4 468 53.4
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 1.7e-37 161.4 456 51.3
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 1.2e-35 155.2 450 53.6
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 6.1e-35 152.9 347 48.7
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 1.4e-34 151.8 344 33.1
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.3e-32 145.2 348 47.4
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 6.4e-32 142.9 204 43.6
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 7.8e-30 136.0 194 41.2
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 8.6e-29 132.5 421 55.6
C04p21250 Brassica napus HOM05D007725 ORTHO05D009774 2.7e-22 110.9 104 59.6
BcaC02g11621 Brassica carinata HOM05D007725 ORTHO05D009774 4.6e-22 110.2 66 84.8
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 1.7e-21 108.2 175 38.9
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 2.1e-19 101.3 343 44.6
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 4.0e-18 97.1 182 45.6
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 2.0e-17 94.7 77 58.4
BcaB06g26090 Brassica carinata HOM05D007725 ORTHO05D009774 1.5e-09 68.6 37 91.9
CDE04G3331 Ceratophyllum demersum HOM05D000050 ORTHO05D009774 7.1e-07 59.7 77 41.6
CBR_g50708 Chara braunii HOM05D007725 ORTHO05D009774 1.2e-06 58.9 328 22.3


User provided reference genes

Program Settings