Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 3.9e-157 558.1 290 100.0
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 3.9e-125 451.8 290 83.4
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 9.0e-122 440.7 288 80.2
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.1e-114 417.2 290 77.2
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 4.1e-106 388.7 290 73.8
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 3.6e-102 375.6 290 70.3
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.8e-98 363.2 316 65.5
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 5.0e-88 328.6 288 65.3
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 5.0e-88 328.6 288 65.3
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 5.2e-85 318.5 288 64.2
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-84 317.0 310 61.6
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-82 310.8 288 63.9
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 7.7e-81 304.7 311 59.5
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 6.5e-80 301.6 306 57.2
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 8.0e-78 294.7 288 59.0
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 3.8e-64 249.2 308 49.7
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 6.5e-64 248.4 313 48.2
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 5.5e-63 245.4 318 47.8
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 7.2e-63 245.0 318 47.8
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 9.5e-63 244.6 318 47.8
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.7e-60 235.3 293 49.5
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 7.5e-60 235.0 335 45.7
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.7e-59 233.8 301 47.8
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.7e-59 233.8 315 46.7
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.2e-59 233.4 305 47.5
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 3.7e-59 232.6 315 46.0
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.1e-58 231.1 322 45.0
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.1e-58 231.1 315 46.7
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 1.8e-58 230.3 312 47.1
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 3.1e-58 229.6 337 46.3
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 4.5e-57 225.7 320 46.9
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 5.9e-57 225.3 276 49.6
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 7.8e-57 224.9 315 45.4
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 7.8e-57 224.9 314 45.5
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.5e-55 220.7 317 44.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 2.5e-55 219.9 311 46.0
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 2.5e-55 219.9 316 42.7
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 7.3e-55 218.4 305 44.3
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.6e-54 217.2 290 46.2
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 1.4e-53 214.2 303 42.9
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.2e-52 211.1 235 54.9
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.5e-52 210.7 320 40.3
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 9.8e-52 208.0 320 42.2
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 9.8e-52 208.0 316 43.4
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.7e-51 207.2 302 43.4
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 6.4e-51 205.3 250 53.6
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-50 204.5 307 44.3
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 3.2e-50 203.0 303 43.6
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 4.1e-50 202.6 317 42.6
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 5.4e-50 202.2 320 44.1
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 9.2e-50 201.4 319 42.0
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 9.2e-50 201.4 303 42.6
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.6e-49 200.7 303 41.9
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 2.0e-49 200.3 318 43.1
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 3.5e-49 199.5 307 43.6
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.5e-49 199.5 320 40.3
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.0e-48 198.0 302 42.7
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.3e-48 197.6 305 41.3
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.7e-48 197.2 303 41.9
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 6.6e-48 195.3 306 41.2
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.9e-47 193.7 312 42.0
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 2.5e-47 193.4 292 41.1
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 2.5e-47 193.4 309 42.7
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 2.5e-47 193.4 301 40.2
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 4.3e-47 192.6 319 38.6
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 4.3e-47 192.6 319 38.6
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 4.3e-47 192.6 296 42.9
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 5.6e-47 192.2 310 41.3
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 7.3e-47 191.8 298 40.3
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 9.5e-47 191.4 319 39.2
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 2.1e-46 190.3 305 41.3
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.1e-46 190.3 306 41.5
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 2.8e-46 189.9 294 41.2
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 4.7e-46 189.1 304 41.4
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 8.0e-46 188.3 338 39.3
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.0e-45 188.0 294 41.8
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.4e-45 187.6 301 39.9
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 2.6e-44 183.3 301 39.5
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 4.4e-44 182.6 357 37.5
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 7.5e-44 181.8 321 40.2
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 7.5e-44 181.8 341 38.1
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 9.8e-44 181.4 309 40.1
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.3e-43 181.0 307 40.7
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.4e-43 178.7 324 38.0
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 8.3e-43 178.3 312 40.1
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.1e-42 177.9 319 37.3
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 1.1e-42 177.9 332 40.1
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 1.4e-42 177.6 270 43.3
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.9e-42 177.2 297 39.7
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 3.2e-42 176.4 310 40.3
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 5.4e-42 175.6 321 38.3
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 7.0e-42 175.3 297 39.1
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 1.2e-41 174.5 163 62.6
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.2e-41 174.5 358 37.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 2.7e-41 173.3 301 39.5
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 2.3e-40 170.2 207 51.2
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 3.9e-40 169.5 382 35.3
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.1e-39 167.9 305 40.0
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.2e-38 164.5 118 73.7
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 3.6e-38 162.9 302 38.4
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 3.6e-38 162.9 309 38.8
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 6.2e-38 162.2 284 40.8
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.1e-37 159.8 316 37.7
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 3.1e-37 159.8 294 38.4
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.2e-36 157.9 318 36.8
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 1.7e-35 154.1 315 37.5
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.2e-35 153.7 295 36.9
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 2.2e-35 153.7 298 37.6
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 2.9e-35 153.3 289 38.4
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 1.4e-34 151.0 292 39.0
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 2.4e-34 150.2 343 36.7
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 5.4e-34 149.1 151 62.3
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.3e-32 144.4 333 35.7
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 3.9e-32 142.9 290 35.9
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.1e-29 134.8 316 35.4
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 2.3e-29 133.7 211 44.1
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.6e-28 130.2 96 65.6
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.7e-27 127.5 225 38.7
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 4.9e-27 125.9 335 31.3
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 1.4e-26 124.4 117 58.1
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 4.1e-26 122.9 408 29.4
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 5.4e-26 122.5 117 59.0
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 2.1e-25 120.6 156 43.6
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 6.0e-25 119.0 246 38.2
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-23 114.8 106 59.4
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 7.3e-23 112.1 209 36.4
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 1.1e-21 108.2 211 35.1
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 4.4e-20 102.8 99 52.5
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 3.8e-19 99.8 100 56.0
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 4.9e-19 99.4 147 37.4
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 6.4e-19 99.0 230 35.2
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.4e-18 97.1 346 27.7
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 5.4e-18 95.9 102 47.1
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 5.4e-18 95.9 227 30.8
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 1.6e-17 94.4 283 27.2
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 3.5e-17 93.2 237 32.9
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 1.7e-16 90.9 198 35.4
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 5.6e-15 85.9 73 57.5
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.3e-14 84.7 59 76.3
AL1G58150 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 6.9e-13 79.0 97 49.5
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-12 77.8 67 53.7
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 3.4e-12 76.6 306 26.1
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-11 74.7 229 31.4
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.7e-11 74.3 111 37.8
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.4e-10 70.5 55 60.0
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 9.3e-10 68.6 346 23.4
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 1.2e-09 68.2 103 47.6
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 1.2e-09 68.2 103 47.6
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 1.6e-09 67.8 108 36.1
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.5e-07 61.2 291 23.7
C09p74960 Brassica napus HOM05D015278 ORTHO05D005923 1.3e-06 58.2 64 56.2
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 4.8e-06 56.2 199 29.6
C01p41070 Brassica napus HOM05D015278 ORTHO05D005923 6.2e-06 55.8 64 54.7
C04p53240 Brassica napus HOM05D015278 ORTHO05D005923 8.1e-06 55.5 64 54.7
C04p53330 Brassica napus HOM05D015278 ORTHO05D005923 8.1e-06 55.5 64 54.7
FAN06G1478 Fragaria x ananassa HOM05D021264 ORTHO05D022594 8.1e-06 55.5 127 35.4


User provided reference genes

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