Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 8.5e-185 650.2 329 100.0
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 5.7e-165 584.3 333 91.6
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 2.7e-159 565.5 329 87.2
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 1.7e-156 556.2 331 88.8
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 3.7e-156 555.1 332 86.1
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 4.1e-155 551.6 333 85.9
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 1.8e-150 536.2 333 83.5
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 7.0e-147 524.2 330 81.2
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 1.2e-146 523.5 330 81.2
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 1.2e-146 523.5 330 81.2
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 4.5e-146 521.5 333 80.8
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 1.0e-145 520.4 329 82.7
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 4.6e-138 495.0 333 77.8
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 2.2e-124 449.5 332 69.0
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 4.3e-120 435.3 332 67.2
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 8.7e-97 357.8 327 57.8
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 2.5e-96 356.3 262 65.3
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 2.5e-96 356.3 337 56.1
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 4.0e-94 349.0 245 66.9
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 6.9e-94 348.2 245 66.5
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 9.0e-94 347.8 333 55.6
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 1.5e-93 347.1 261 63.6
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 2.6e-93 346.3 335 55.2
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 8.4e-92 341.3 331 57.7
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.9e-91 340.1 331 57.1
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 1.9e-91 340.1 331 57.7
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 1.2e-90 337.4 255 65.5
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 1.6e-90 337.0 333 55.9
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 1.9e-88 330.1 329 54.1
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 4.3e-88 328.9 341 55.7
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 4.3e-88 328.9 270 61.9
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 5.6e-88 328.6 331 54.4
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 7.4e-88 328.2 336 54.8
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 1.6e-87 327.0 337 53.4
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 2.1e-87 326.6 268 61.6
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 2.8e-87 326.2 270 61.9
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 3.7e-87 325.9 257 64.2
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 1.1e-86 324.3 337 54.6
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 1.8e-86 323.6 337 53.7
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 3.1e-86 322.8 336 53.9
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 5.3e-86 322.0 252 63.5
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 1.2e-85 320.9 335 53.1
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 1.2e-85 320.9 267 60.7
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 2.0e-85 320.1 292 57.2
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.6e-85 319.7 336 53.6
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 3.4e-85 319.3 335 52.8
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.4e-85 319.3 335 52.8
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 5.8e-85 318.5 307 55.0
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 7.6e-85 318.2 335 52.8
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 7.6e-85 318.2 336 53.3
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 1.0e-84 317.8 328 55.2
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 1.0e-84 317.8 328 55.2
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 1.3e-84 317.4 334 52.7
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 2.9e-84 316.2 232 65.9
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 3.8e-84 315.8 320 56.2
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 1.9e-83 313.5 281 56.9
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 1.9e-83 313.5 329 51.7
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 2.5e-83 313.2 251 61.0
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 3.2e-83 312.8 303 54.8
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 4.2e-83 312.4 332 53.0
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 5.5e-83 312.0 334 53.0
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 5.5e-83 312.0 332 53.0
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 9.3e-83 311.2 248 62.1
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 1.2e-82 310.8 327 53.2
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 1.2e-82 310.8 255 60.0
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 1.2e-82 310.8 329 51.4
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 3.5e-82 309.3 303 54.1
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 4.6e-82 308.9 310 52.3
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 1.0e-81 307.8 255 61.2
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 1.8e-81 307.0 254 60.6
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 5.1e-81 305.4 260 58.8
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 8.7e-81 304.7 341 48.1
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 1.1e-80 304.3 265 57.4
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 1.9e-80 303.5 287 56.8
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 1.9e-80 303.5 243 60.9
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 3.3e-80 302.8 254 59.8
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 4.3e-80 302.4 334 51.8
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 5.7e-80 302.0 317 53.3
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 9.7e-80 301.2 270 56.7
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 1.3e-79 300.8 282 55.0
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 2.2e-79 300.1 267 56.2
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 4.8e-79 298.9 269 56.5
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 3.1e-78 296.2 250 63.6
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 4.1e-78 295.8 331 46.5
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 6.9e-78 295.0 239 60.7
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 1.5e-77 293.9 270 55.6
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 1.3e-76 290.8 243 58.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.0e-76 288.9 217 64.1
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 3.0e-73 279.6 336 49.4
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 6.7e-73 278.5 264 52.7
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 6.7e-73 278.5 270 54.4
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 8.8e-73 278.1 248 56.9
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 5.7e-72 275.4 223 60.5
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 2.4e-70 270.0 263 52.5
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 1.0e-68 264.6 249 55.4
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 1.3e-68 264.2 388 44.1
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 4.2e-67 259.2 233 57.1
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 9.7e-64 248.1 332 44.6
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 5.9e-61 238.8 240 52.9
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 2.4e-54 216.9 170 61.2
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 5.3e-54 215.7 256 48.8
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 3.8e-52 209.5 221 50.7
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 4.7e-50 202.6 163 61.3
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 9.7e-48 194.9 149 63.8
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 2.2e-47 193.7 244 46.7
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 1.1e-46 191.4 256 40.2
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 1.1e-46 191.4 244 45.9
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 2.9e-44 183.3 184 54.9
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 3.8e-44 183.0 255 41.2
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 4.7e-42 176.0 141 61.0
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 2.3e-41 173.7 248 39.1
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 6.8e-41 172.2 198 50.0
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 1.5e-40 171.0 187 50.8
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 7.0e-38 162.2 102 71.6
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 2.7e-37 160.2 142 58.5
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 7.7e-37 158.7 161 49.1
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.2e-32 144.8 190 46.8
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 3.7e-31 139.8 136 52.9
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 5.4e-30 136.0 97 66.0
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 2.3e-28 130.6 126 50.0
BolC5t33213H Brassica oleracea HOM05D006509 ORTHO05D008144 5.6e-27 125.9 102 67.6
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 2.4e-22 110.5 114 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 1.2e-21 108.2 242 34.7
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.8e-17 94.4 64 68.8
Oeu033605.1 Olea europaea HOM05D006509 ORTHO05D008144 8.9e-09 65.5 73 45.2
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 4.4e-08 63.2 81 44.4


User provided reference genes

Program Settings