Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 3.0e-25 117.9 65 100.0
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 8.7e-25 116.3 65 98.5
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 2.5e-24 114.8 65 98.5
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.4e-22 108.2 65 90.8
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 5.8e-21 103.6 64 90.6
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 1.1e-19 99.4 65 87.7
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 7.1e-19 96.7 64 82.8
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 7.1e-19 96.7 64 82.8
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.6e-18 95.5 64 85.9
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.6e-18 95.5 64 85.9
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.6e-18 95.5 64 85.9
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 3.5e-18 94.4 64 84.4
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 3.5e-18 94.4 64 84.4
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.3e-17 92.4 68 73.5
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.7e-17 89.7 63 74.6
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.7e-17 89.7 63 74.6
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 5.7e-16 87.0 63 74.6
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 7.4e-16 86.7 65 69.2
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-15 85.9 63 73.0
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.6e-15 85.5 60 76.7
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.6e-15 85.5 63 73.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.1e-15 85.1 63 71.4
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.7e-15 84.3 63 69.8
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.8e-15 84.0 64 75.0
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.8e-15 84.0 63 69.8
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 6.3e-15 83.6 63 71.4
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 6.3e-15 83.6 63 73.0
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.3e-15 83.6 63 69.8
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 6.3e-15 83.6 65 70.8
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 6.3e-15 83.6 65 70.8
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.3e-15 83.6 63 69.8
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 8.2e-15 83.2 64 71.9
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 8.2e-15 83.2 63 71.4
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 8.2e-15 83.2 63 69.8
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 8.2e-15 83.2 63 69.8
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 8.2e-15 83.2 65 70.8
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.1e-14 82.8 66 72.7
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.1e-14 82.8 63 69.8
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.4e-14 82.4 60 78.3
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-14 82.4 64 70.3
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.4e-14 82.4 60 73.3
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.8e-14 82.0 59 79.7
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 2.4e-14 81.6 64 70.3
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.4e-14 81.6 63 69.8
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 2.4e-14 81.6 63 66.7
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 2.4e-14 81.6 60 73.3
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.1e-14 81.3 65 69.2
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 3.1e-14 81.3 61 68.9
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.1e-14 80.9 60 71.7
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 4.1e-14 80.9 61 70.5
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 5.3e-14 80.5 61 75.4
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.3e-14 80.5 63 66.7
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 5.3e-14 80.5 65 67.7
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.3e-14 80.5 63 68.3
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.9e-14 80.1 66 71.2
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 6.9e-14 80.1 61 75.4
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.9e-14 80.1 63 68.3
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 6.9e-14 80.1 64 70.3
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.2e-13 79.3 61 73.8
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.2e-13 79.3 63 69.8
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.2e-13 79.3 61 72.1
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.2e-13 79.3 64 70.3
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.2e-13 79.3 65 70.8
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.5e-13 79.0 63 66.7
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.5e-13 79.0 61 73.8
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.0e-13 78.6 66 68.2
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.6e-13 78.2 64 71.9
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.4e-13 77.8 62 72.6
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 3.4e-13 77.8 65 67.7
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.4e-13 77.8 65 69.2
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.4e-13 77.8 65 69.2
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 5.9e-13 77.0 65 69.2
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 5.9e-13 77.0 62 66.1
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 5.9e-13 77.0 65 67.7
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.0e-12 76.3 65 63.1
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.3e-12 75.9 66 65.2
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.3e-12 75.9 66 65.2
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.7e-12 75.5 60 66.7
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.8e-12 74.3 63 61.9
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 6.5e-12 73.6 64 67.2
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 8.4e-12 73.2 66 63.6
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 5.5e-11 70.5 67 62.7
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 9.3e-11 69.7 63 63.5
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.1e-10 68.6 64 60.9
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 2.7e-10 68.2 60 63.3
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.3e-09 65.1 59 61.0
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 2.3e-09 65.1 64 60.9
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.9e-09 64.3 60 51.7
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.9e-09 64.3 60 51.7
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 5.1e-09 63.9 68 63.2
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 6.7e-09 63.5 66 54.5
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.9e-08 62.0 71 52.1
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 5.7e-08 60.5 59 59.3
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 9.7e-08 59.7 62 59.7
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 9.7e-08 59.7 56 62.5
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 9.7e-08 59.7 59 61.0
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.3e-07 59.3 62 56.5
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.6e-07 58.9 58 60.3
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.8e-07 58.2 52 63.5
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.3e-07 57.0 52 63.5
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 1.4e-06 55.8 76 51.3
C01p44470 Brassica napus HOM05D001568 ORTHO05D004404 1.8e-06 55.5 46 78.3
BolC1t04412H Brassica oleracea HOM05D001568 ORTHO05D004404 1.8e-06 55.5 46 78.3
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 3.1e-06 54.7 61 50.8
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 4.1e-06 54.3 60 55.0
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 4.1e-06 54.3 59 52.5
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.3e-06 53.9 58 53.4
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.3e-06 53.9 58 55.2
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.9e-06 53.5 58 55.2
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 6.9e-06 53.5 62 51.6
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 9.0e-06 53.1 60 48.3
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 9.0e-06 53.1 60 48.3


User provided reference genes

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