Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 2.4e-42 174.9 76 100.0
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.4e-37 159.1 76 90.8
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.8e-34 148.7 80 83.8
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 2.7e-33 144.8 70 87.1
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 5.2e-29 130.6 76 78.9
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 6.8e-29 130.2 76 76.3
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.6e-28 128.3 77 76.6
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 1.3e-27 125.9 76 76.3
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 1.3e-27 125.9 76 75.0
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 1.3e-27 125.9 76 76.3
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.3e-27 125.9 76 75.0
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 1.7e-27 125.6 76 76.3
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 1.7e-27 125.6 76 76.3
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 2.2e-27 125.2 76 73.7
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 6.4e-27 123.6 76 73.7
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 6.4e-27 123.6 76 73.7
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 6.4e-27 123.6 76 75.0
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 6.4e-27 123.6 76 73.7
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 1.1e-26 122.9 76 73.7
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 1.1e-26 122.9 76 73.7
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 7.8e-25 116.7 73 72.6
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.9e-23 112.1 68 76.5
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 4.1e-18 94.4 65 60.0
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 4.1e-18 94.4 56 71.4
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.2e-17 92.8 62 62.9
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.2e-17 92.8 62 62.9
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.6e-17 92.4 56 67.9
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.6e-17 92.4 51 74.5
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.6e-17 92.4 51 74.5
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.1e-17 92.0 66 60.6
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.1e-17 92.0 53 67.9
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 4.6e-17 90.9 46 80.4
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 4.6e-17 90.9 48 77.1
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.8e-17 90.1 53 69.8
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.8e-17 90.1 53 69.8
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.3e-16 89.4 49 77.6
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 2.3e-16 88.6 52 71.2
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 3.0e-16 88.2 50 68.0
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 3.0e-16 88.2 48 70.8
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.1e-16 87.4 49 69.4
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 5.1e-16 87.4 51 70.6
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 6.6e-16 87.0 56 73.2
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 6.6e-16 87.0 49 75.5
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.1e-15 86.3 47 72.3
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.1e-15 86.3 55 63.6
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 1.5e-15 85.9 48 72.9
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 2.5e-15 85.1 52 69.2
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 2.5e-15 85.1 50 66.0
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 4.3e-15 84.3 47 76.6
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 4.3e-15 84.3 60 56.7
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 5.6e-15 84.0 68 52.9
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 5.6e-15 84.0 45 73.3
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 5.6e-15 84.0 47 68.1
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 5.6e-15 84.0 60 56.7
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 5.6e-15 84.0 49 73.5
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 7.3e-15 83.6 66 56.1
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 7.3e-15 83.6 47 70.2
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 7.3e-15 83.6 48 70.8
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 9.5e-15 83.2 49 67.3
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.2e-14 82.8 59 62.7
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 1.2e-14 82.8 58 60.3
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.1e-14 82.0 54 59.3
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 2.1e-14 82.0 54 59.3
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 2.1e-14 82.0 57 61.4
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 2.1e-14 82.0 60 61.7
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.1e-14 82.0 51 62.7
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.1e-14 82.0 53 62.3
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 2.1e-14 82.0 47 68.1
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 2.8e-14 81.6 53 67.9
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 3.6e-14 81.3 60 55.0
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 4.7e-14 80.9 50 72.0
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 4.7e-14 80.9 50 72.0
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 4.7e-14 80.9 50 72.0
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 4.7e-14 80.9 50 72.0
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 4.7e-14 80.9 53 69.8
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 4.7e-14 80.9 48 66.7
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 6.2e-14 80.5 47 68.1
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 6.2e-14 80.5 54 63.0
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 6.2e-14 80.5 52 67.3
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 8.1e-14 80.1 61 57.4
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 1.4e-13 79.3 47 68.1
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.4e-13 79.3 50 74.0
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 1.4e-13 79.3 53 64.2
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 1.4e-13 79.3 51 64.7
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 1.8e-13 79.0 53 66.0
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.8e-13 79.0 44 75.0
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 2.4e-13 78.6 60 53.3
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 4.0e-13 77.8 48 75.0
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 6.8e-13 77.0 54 59.3
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 6.8e-13 77.0 50 62.0
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.5e-12 75.9 72 48.6
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.0e-12 75.5 47 63.8
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 2.0e-12 75.5 53 64.2
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 3.4e-12 74.7 44 63.6
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 3.4e-12 74.7 53 60.4
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 3.4e-12 74.7 49 57.1
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 4.4e-12 74.3 54 59.3
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 5.8e-12 73.9 47 66.0
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 5.8e-12 73.9 47 63.8
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 5.8e-12 73.9 62 51.6
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 7.6e-12 73.6 41 70.7
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 9.9e-12 73.2 51 54.9
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.7e-11 72.4 55 54.5
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.2e-11 72.0 51 54.9
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.2e-11 72.0 62 48.4
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 2.2e-11 72.0 47 55.3
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 2.9e-11 71.6 45 66.7
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 3.8e-11 71.2 39 71.8
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 8.4e-11 70.1 48 58.3
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 2.4e-10 68.6 48 58.3
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 3.2e-10 68.2 43 62.8
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 5.4e-10 67.4 51 56.9
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 1.2e-09 66.2 42 59.5
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.2e-09 66.2 42 64.3
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.6e-09 65.9 42 61.9
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.6e-09 65.9 46 58.7
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 4.6e-09 64.3 43 58.1
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 7.8e-09 63.5 37 70.3
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.3e-08 62.8 44 63.6
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.3e-08 62.8 43 55.8
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 2.3e-08 62.0 42 57.1
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 2.3e-08 62.0 36 66.7
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 3.0e-08 61.6 39 56.4
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.0e-08 61.6 41 61.0
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 5.1e-08 60.8 38 63.2
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 6.6e-08 60.5 37 67.6
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 1.5e-07 59.3 36 63.9
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 9.6e-07 56.6 37 64.9
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 1.2e-06 56.2 59 44.1
PGR031G2543 Punica granatum HOM05D008232 ORTHO05D010390 1.6e-06 55.8 43 53.5


User provided reference genes

Program Settings