Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 1.2e-39 166.0 82 100.0
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 6.0e-39 163.7 82 97.6
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 1.0e-38 162.9 82 97.6
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 6.6e-38 160.2 82 96.3
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 1.9e-37 158.7 82 95.1
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 3.3e-37 157.9 82 95.1
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 3.3e-37 157.9 82 95.1
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 3.3e-37 157.9 82 95.1
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 5.6e-37 157.1 82 93.9
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 5.6e-37 157.1 82 93.9
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 5.6e-37 157.1 82 93.9
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 5.6e-37 157.1 82 93.9
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 5.6e-37 157.1 82 93.9
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 1.3e-36 156.0 82 92.7
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 1.3e-36 156.0 82 92.7
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 1.3e-36 156.0 82 92.7
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 2.8e-36 154.8 82 91.5
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 3.6e-36 154.5 82 92.7
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 4.3e-29 131.0 80 80.0
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 4.3e-29 131.0 80 80.0
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 5.6e-29 130.6 83 78.3
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 5.6e-29 130.6 80 77.5
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 1.6e-28 129.0 83 73.5
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 1.6e-28 129.0 83 75.9
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 1.6e-28 129.0 81 79.0
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 1.6e-28 129.0 81 76.5
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 2.1e-28 128.6 81 75.3
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 2.8e-28 128.3 80 78.8
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 2.8e-28 128.3 80 78.8
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 3.6e-28 127.9 82 75.6
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 3.6e-28 127.9 81 76.5
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 1.4e-27 125.9 80 77.5
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 1.8e-27 125.6 81 74.1
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 76.2
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 2.4e-27 125.2 83 69.9
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 2.4e-27 125.2 83 69.9
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 2.4e-27 125.2 83 75.9
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 3.1e-27 124.8 80 75.0
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 3.1e-27 124.8 80 73.8
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 4.0e-27 124.4 80 73.8
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 6.9e-27 123.6 80 73.8
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 6.9e-27 123.6 80 75.0
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 9.0e-27 123.2 80 75.0
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 1.2e-26 122.9 83 72.3
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 1.5e-26 122.5 81 72.8
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 1.5e-26 122.5 80 72.5
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 73.8
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 73.8
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 71.2
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 72.5
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 3.4e-26 121.3 80 71.2
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 3.4e-26 121.3 80 70.0
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 5.8e-26 120.6 80 72.5
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 9.9e-26 119.8 83 71.1
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 9.9e-26 119.8 83 69.9
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 9.9e-26 119.8 83 69.9
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 9.9e-26 119.8 80 73.8
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 72.5
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 1.7e-25 119.0 80 72.5
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 2.2e-25 118.6 95 71.6
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 2.2e-25 118.6 80 71.2
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 71.2
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 71.2
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 72.5
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 3.8e-25 117.9 80 70.0
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 3.8e-25 117.9 80 72.5
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 4.9e-25 117.5 80 71.2
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 4.9e-25 117.5 80 68.8
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 6.4e-25 117.1 80 72.5
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 8.4e-25 116.7 80 67.5
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 1.1e-24 116.3 83 67.5
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 1.1e-24 116.3 80 72.5
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 1.4e-24 115.9 80 70.0
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 1.4e-24 115.9 80 72.5
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 67.5
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 71.2
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 67.5
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 2.4e-24 115.2 80 71.2
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 2.4e-24 115.2 83 66.3
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 68.8
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 68.8
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 71.2
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 4.2e-24 114.4 87 73.6
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 4.2e-24 114.4 80 70.0
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.1e-24 113.6 82 68.3
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 7.1e-24 113.6 79 72.2
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 9.3e-24 113.2 80 67.5
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 1.2e-23 112.8 83 67.5
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 1.6e-23 112.5 111 61.3
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 1.6e-23 112.5 80 67.5
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.6e-23 112.5 80 68.8
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 2.7e-23 111.7 79 72.2
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 4.6e-23 110.9 80 65.0
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 1.0e-22 109.8 80 65.0
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 1.3e-22 109.4 79 68.4
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.8e-22 109.0 80 67.5
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 8.7e-22 106.7 80 65.0
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 1.5e-21 105.9 82 62.2
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 4.8e-20 100.9 79 64.6
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 6.9e-19 97.1 76 65.8
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 1.2e-18 96.3 66 69.7
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 5.8e-18 94.0 65 69.2
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 4.9e-17 90.9 54 87.0
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 8.4e-17 90.1 69 62.3
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 2.5e-16 88.6 75 60.0
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 1.2e-15 86.3 60 68.3
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 2.7e-15 85.1 57 73.7
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 3.9e-14 81.3 81 49.4
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 8.7e-14 80.1 81 49.4
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 2.9e-09 65.1 76 42.1
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 1.1e-08 63.2 61 52.5
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 9.3e-08 60.1 40 72.5
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 7.9e-07 57.0 59 45.8


User provided reference genes

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