Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 1.1e-107 393.3 188 100.0
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.5e-106 389.4 188 99.5
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 8.5e-97 357.1 188 91.0
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 1.1e-96 356.7 188 91.0
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 9.4e-96 353.6 188 89.9
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 3.1e-91 338.6 189 87.8
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 9.1e-91 337.0 188 87.2
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 2.0e-90 335.9 188 88.3
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 2.0e-90 335.9 189 87.3
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 4.5e-90 334.7 188 87.2
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 5.2e-86 321.2 186 83.9
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 5.0e-57 224.9 123 90.2
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.0e-54 217.2 197 59.9
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 4.0e-54 215.3 199 56.8
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 7.5e-53 211.1 205 55.6
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 2.9e-52 209.1 193 59.1
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 2.9e-52 209.1 208 54.8
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 3.7e-52 208.8 190 55.8
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 3.7e-52 208.8 154 65.6
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 3.7e-52 208.8 175 62.3
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 4.9e-52 208.4 176 58.0
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 6.4e-52 208.0 191 57.6
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 2.4e-51 206.1 185 56.2
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 4.1e-51 205.3 190 56.8
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 7.0e-51 204.5 168 61.3
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.2e-50 203.8 179 62.6
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 3.5e-50 202.2 190 55.3
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 4.6e-50 201.8 131 70.2
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 4.6e-50 201.8 131 70.2
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 7.8e-50 201.1 217 52.1
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.0e-49 200.7 119 75.6
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 1.3e-49 200.3 181 58.6
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 1.3e-49 200.3 168 61.9
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.7e-49 199.9 195 55.4
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.3e-49 199.5 191 56.0
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 2.3e-49 199.5 191 56.0
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 5.0e-49 198.4 191 55.5
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 5.0e-49 198.4 192 53.1
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.6e-49 198.0 169 61.5
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 8.6e-49 197.6 170 58.8
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 1.1e-48 197.2 162 61.1
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 4.3e-48 195.3 198 53.0
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 4.3e-48 195.3 190 55.3
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 7.3e-48 194.5 185 51.4
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 9.5e-48 194.1 174 53.4
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 1.2e-47 193.7 187 57.8
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 1.1e-46 190.7 185 51.4
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 4.0e-46 188.7 179 57.5
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 8.9e-46 187.6 129 66.7
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 8.9e-46 187.6 198 52.5
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 1.2e-45 187.2 171 56.7
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 5.8e-45 184.9 161 59.0
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 7.5e-45 184.5 186 55.4
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 3.7e-44 182.2 174 54.0
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 3.7e-44 182.2 185 53.5
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 6.4e-44 181.4 195 51.8
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 8.3e-44 181.0 173 55.5
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 8.3e-44 181.0 181 57.5
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 3.2e-43 179.1 184 53.3
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 9.2e-43 177.6 194 53.1
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.2e-42 177.2 164 57.3
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.6e-42 176.8 183 53.0
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 2.0e-42 176.4 178 55.1
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 2.0e-42 176.4 109 69.7
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 4.6e-42 175.3 190 51.6
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 1.3e-41 173.7 145 60.0
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.7e-41 173.3 145 60.0
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 2.3e-41 172.9 146 58.9
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 3.0e-41 172.6 144 59.0
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 3.0e-41 172.6 107 73.8
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 3.9e-41 172.2 106 73.6
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 3.9e-41 172.2 97 77.3
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 5.0e-41 171.8 174 52.3
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 5.0e-41 171.8 107 73.8
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 6.6e-41 171.4 153 58.8
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 6.6e-41 171.4 135 60.7
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 1.5e-40 170.2 191 50.3
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 7.3e-40 167.9 87 80.5
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 1.6e-39 166.8 179 49.7
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 1.6e-39 166.8 168 54.8
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.1e-39 166.4 153 56.9
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 2.8e-39 166.0 184 46.2
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 2.8e-39 166.0 168 53.0
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 6.2e-39 164.9 168 53.0
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 6.2e-39 164.9 173 47.4
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 2.3e-38 162.9 145 55.9
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 5.2e-38 161.8 104 71.2
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 6.8e-38 161.4 193 47.2
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.5e-37 160.2 111 66.7
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 2.6e-37 159.5 143 56.6
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 4.4e-37 158.7 126 60.3
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 2.2e-36 156.4 100 68.0
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 4.1e-35 152.1 135 55.6
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.7e-33 146.7 126 57.1
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 6.6e-33 144.8 74 85.1
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 4.3e-32 142.1 173 46.2
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 1.1e-30 137.5 127 52.0
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.8e-30 136.7 92 68.5
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 9.9e-29 131.0 140 47.9
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.3e-28 130.6 119 52.1
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 1.7e-28 130.2 108 56.5
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 6.4e-28 128.3 110 51.8
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.7e-25 120.2 173 42.8
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.5e-24 117.1 191 39.8
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.5e-24 117.1 97 54.6
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 3.3e-24 115.9 96 52.1
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 1.5e-21 107.1 125 50.4
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 2.6e-21 106.3 128 50.8
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 8.4e-20 101.3 171 40.9
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 6.6e-17 91.7 76 55.3
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 3.3e-16 89.4 69 65.2
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 1.3e-15 87.4 117 43.6
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 8.1e-15 84.7 122 41.8
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 8.4e-12 74.7 104 42.3


User provided reference genes

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