Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 3757.6 1893 100.0
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 3523.8 1894 94.1
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 3328.5 1895 89.4
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 3273.0 1898 87.7
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 3250.3 1895 87.0
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 3223.7 1903 86.2
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3061.9 1902 82.9
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3053.5 1901 82.3
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 3053.1 1901 82.3
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3050.8 1901 82.3
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 3039.2 1904 82.0
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3038.4 1906 82.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 2999.9 1896 80.3
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 2642.8 1916 71.7
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1784.6 2007 51.4
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1775.8 1993 51.1
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1768.1 1948 51.1
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1762.7 2044 49.7
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1754.6 1982 50.8
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1751.9 2007 49.9
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1751.9 2007 49.7
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1746.1 2004 49.2
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1744.9 2008 50.1
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1739.5 2010 49.9
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1736.5 2025 49.9
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1734.2 2010 49.1
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1727.2 2000 50.1
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1718.7 2013 49.6
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1717.6 2013 49.2
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1709.5 1992 49.9
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1708.7 2035 49.0
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1701.8 2020 49.0
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1701.0 2028 48.7
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1697.2 1998 49.6
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1695.6 2008 48.8
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1691.0 2005 48.6
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1670.2 1999 49.3
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1665.2 1991 49.3
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1651.3 2036 47.2
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1651.0 2017 48.2
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1644.8 2024 48.0
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1639.4 2021 47.4
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1624.8 2033 47.4
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1621.7 2002 48.3
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1612.8 1998 46.8
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1611.3 2031 46.7
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1609.0 2004 46.7
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1608.2 2017 47.4
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1606.7 1978 46.9
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1583.5 2007 46.2
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1578.1 2001 46.2
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1567.4 1986 45.9
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1564.7 2000 45.6
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1562.7 2003 45.5
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1562.4 1998 46.0
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1559.3 2014 45.6
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1556.2 2025 46.4
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1552.7 1997 45.8
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1551.6 2047 45.2
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1550.0 1991 46.4
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1539.6 2019 45.2
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1529.6 1990 45.3
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1506.1 2002 44.6
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1501.5 2012 45.2
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1470.7 2004 44.6
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1466.8 1999 44.4
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1466.8 1998 43.6
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1460.3 2026 44.2
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1459.9 1990 44.4
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1447.2 2031 43.9
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1444.9 1908 45.4
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1440.6 1939 44.7
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1439.9 2026 43.0
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1439.5 2005 43.7
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1434.9 2005 43.7
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1427.5 1933 43.7
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1395.9 1999 42.1
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1395.2 2058 43.0
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1377.1 2000 42.5
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1373.2 1926 43.3
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1370.5 1879 43.0
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1368.2 1910 42.9
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1355.1 1914 43.3
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1347.4 2131 40.2
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1315.4 1997 42.0
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1283.9 1716 45.2
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1275.0 1722 45.2
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1275.0 1916 42.0
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1254.2 1967 41.3
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1248.0 1450 49.1
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1232.6 1454 48.4
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1179.5 1775 41.1
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1139.4 2069 36.6
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1080.5 1723 40.1
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 5.2e-303 1045.4 1978 35.0
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 9.9e-278 961.4 1649 38.7
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 2.1e-267 927.2 1156 47.4
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 6.9e-263 912.1 2102 32.3
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 6.3e-232 809.3 2152 31.4
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.0e-229 802.0 1454 36.2
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.2e-224 784.3 1672 33.0
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 2.8e-195 687.6 2096 29.0
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.7e-184 651.7 1937 29.4
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.6e-182 645.2 673 54.5
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.1e-154 552.7 1831 27.0
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 5.1e-149 533.9 1682 27.6
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 3.6e-147 527.7 1167 34.3
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.1e-135 489.6 435 59.1
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.7e-131 474.6 393 60.1
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 3.1e-122 444.9 348 66.4
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.4e-117 429.5 379 55.9
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 6.3e-107 394.0 288 69.1
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 9.4e-103 380.2 353 58.4
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.0e-101 375.2 437 49.4
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 7.7e-97 360.5 274 65.3
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.3e-91 343.2 986 29.6
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.0e-72 280.4 198 67.2
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 7.3e-71 274.2 499 37.9
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.6e-65 256.5 245 56.7
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 8.6e-64 250.8 365 40.3
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.3e-51 210.3 234 51.3
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 2.7e-49 202.6 180 58.3
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 5.2e-45 188.3 502 28.5
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 2.9e-43 182.6 180 56.1
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.3e-39 168.7 304 36.5
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 4.9e-35 155.2 173 51.4
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-27 129.4 593 24.1
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 8.4e-27 127.9 83 66.3
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 4.2e-26 125.6 211 36.5
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 4.3e-23 115.5 323 27.6
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 4.8e-22 112.1 67 79.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 4.8e-22 112.1 67 79.1
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.0e-21 109.0 260 31.5
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 3.8e-19 102.4 64 78.1
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 8.4e-19 101.3 71 70.4
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 9.3e-18 97.8 68 64.7
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 4.6e-17 95.5 62 69.4
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.8e-16 93.6 56 85.7
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-16 93.2 100 46.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 3.3e-15 89.4 99 46.5
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 4.8e-14 85.5 57 77.2
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 5.3e-13 82.0 126 38.9
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 9.7e-07 61.2 55 52.7


User provided reference genes

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