Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G32470 Arabidopsis lyrata HOM05D011679 ORTHO05D012451 5.0e-190 667.5 323 100.0
A02p40520 Brassica napus HOM05D011679 ORTHO05D012451 2.8e-15 87.0 179 33.0
A02p40630 Brassica napus HOM05D011679 ORTHO05D012451 1.1e-14 85.1 163 33.1
BraA02t09010Z Brassica rapa HOM05D011679 ORTHO05D012451 2.4e-14 84.0 163 33.7
A02p40400 Brassica napus HOM05D011679 ORTHO05D012451 1.2e-13 81.6 163 33.1
C04p36520 Brassica napus HOM05D010965 ORTHO05D024278 2.6e-13 80.5 346 26.3
BolC4t25144H Brassica oleracea HOM05D010965 ORTHO05D024278 2.6e-13 80.5 346 26.3
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 1.7e-12 77.8 258 26.4
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 5.0e-12 76.3 207 28.0
BcaC02g09794 Brassica carinata HOM05D010965 ORTHO05D024278 6.5e-12 75.9 216 29.2
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 3.2e-11 73.6 256 25.8
BolC2t12090H Brassica oleracea HOM05D011679 ORTHO05D012451 2.7e-10 70.5 162 30.2
CARHR166160 Cardamine hirsuta HOM05D011679 ORTHO05D012451 1.8e-09 67.8 164 35.4
Thhalv10006280m.g Eutrema salsugineum HOM05D014685 ORTHO05D011865 2.3e-09 67.4 86 34.9
CARHR172850 Cardamine hirsuta HOM05D021205 ORTHO05D018443 3.9e-09 66.6 156 26.3
BolC2t12252H Brassica oleracea HOM05D011679 ORTHO05D012451 6.7e-09 65.9 162 32.7
Carub.0005s2233 Capsella rubella HOM05D011679 ORTHO05D012451 6.7e-09 65.9 105 36.2
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 8.8e-09 65.5 174 28.2
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 1.1e-08 65.1 256 22.7
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 1.5e-08 64.7 173 26.0
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 1.5e-08 64.7 174 28.2
AL7G21380 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 2.5e-08 63.9 84 38.1
AT4G30760 Arabidopsis thaliana HOM05D001456 ORTHO05D011865 2.5e-08 63.9 107 36.4
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 3.3e-08 63.5 172 27.3
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 3.3e-08 63.5 174 27.0
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 3.3e-08 63.5 175 25.1
Thhalv10026082m.g Eutrema salsugineum HOM05D011772 ORTHO05D010099 3.3e-08 63.5 158 32.9
C07p50280 Brassica napus HOM05D001636 ORTHO05D009134 4.3e-08 63.2 162 28.4
BcaNung03075 Brassica carinata HOM05D001636 ORTHO05D009134 5.7e-08 62.8 162 29.0
BolC7t45530H Brassica oleracea HOM05D001636 ORTHO05D009134 5.7e-08 62.8 162 29.0
CARHR172830 Cardamine hirsuta HOM05D001456 ORTHO05D011865 7.4e-08 62.4 146 30.1
AL5G20610 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 1.3e-07 61.6 168 30.4
A02p42600 Brassica napus HOM05D001636 ORTHO05D009134 1.3e-07 61.6 153 28.8
Carub.0001s2894 Capsella rubella HOM05D025627 ORTHO05D012451 1.3e-07 61.6 159 27.7
CARHR043790 Cardamine hirsuta HOM05D001456 ORTHO05D011865 1.3e-07 61.6 109 34.9
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 1.7e-07 61.2 225 26.2
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 1.7e-07 61.2 225 26.2
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 1.7e-07 61.2 188 28.2
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 3.7e-07 60.1 176 26.7
AL1G58410 Arabidopsis lyrata HOM05D021205 ORTHO05D010099 4.8e-07 59.7 154 32.5
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 4.8e-07 59.7 199 27.1
C02p60340 Brassica napus HOM05D011679 ORTHO05D012451 6.3e-07 59.3 133 30.8
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 6.3e-07 59.3 203 26.6
CSS0013085 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 8.2e-07 58.9 182 26.4
Thecc.01G323400 Theobroma cacao HOM05D001456 ORTHO05D002799 8.2e-07 58.9 176 26.1
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 1.1e-06 58.5 199 26.6
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 1.1e-06 58.5 198 26.3
Eucgr.K00579 Eucalyptus grandis HOM05D001456 ORTHO05D002799 1.4e-06 58.2 200 25.5
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.4e-06 58.2 340 23.8
Glyma.19G225800 Glycine max HOM05D001456 ORTHO05D002799 1.4e-06 58.2 182 26.9
Os07g0637200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D002799 1.4e-06 58.2 202 27.2
AT3G61090 Arabidopsis thaliana HOM05D001456 ORTHO05D011781 1.8e-06 57.8 174 28.2
C06p00010 Brassica napus HOM05D014685 ORTHO05D011865 1.8e-06 57.8 136 28.7
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 1.8e-06 57.8 198 26.3
AL5G41570 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 2.4e-06 57.4 172 27.9
AL5G43300 Arabidopsis lyrata HOM05D001456 ORTHO05D011781 2.4e-06 57.4 172 27.3
arahy.Tifrunner.gnm1.ann1.95CVAH Arachis hypogaea HOM05D001456 ORTHO05D002799 2.4e-06 57.4 169 26.0
arahy.Tifrunner.gnm1.ann1.XUXX3P Arachis hypogaea HOM05D001456 ORTHO05D002799 2.4e-06 57.4 169 26.0
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 2.4e-06 57.4 192 26.6
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 2.4e-06 57.4 128 26.6
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 2.4e-06 57.4 223 26.9
C02p17550 Brassica napus HOM05D001636 ORTHO05D009134 3.1e-06 57.0 167 24.0
CARHR216620 Cardamine hirsuta HOM05D001456 ORTHO05D011865 3.1e-06 57.0 139 28.1
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 3.1e-06 57.0 174 25.9
Potri.013G003000 Populus trichocarpa HOM05D001456 ORTHO05D002799 3.1e-06 57.0 168 25.6
Potri.013G003200 Populus trichocarpa HOM05D001456 ORTHO05D002799 3.1e-06 57.0 172 24.4
RcHm_v2.0_Chr3g0486181 Rosa chinensis HOM05D001456 ORTHO05D002799 3.1e-06 57.0 170 26.5
TWI23G1113 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 3.1e-06 57.0 186 25.3
MSTRG.20358 Avicennia marina HOM05D001456 ORTHO05D002799 4.1e-06 56.6 201 24.9
BolC7t45436H Brassica oleracea HOM05D001636 ORTHO05D009134 4.1e-06 56.6 159 25.8
ClCG01G007140 Citrullus lanatus HOM05D001456 ORTHO05D002799 4.1e-06 56.6 183 26.8
Prupe.3G003800 Prunus persica HOM05D001456 ORTHO05D002799 4.1e-06 56.6 171 25.7
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 4.1e-06 56.6 188 24.5
Rhsim05G0122100 Rhododendron simsii HOM05D001456 ORTHO05D002799 4.1e-06 56.6 195 26.7
GSVIVG01028213001 Vitis vinifera HOM05D001456 ORTHO05D002799 4.1e-06 56.6 179 26.3
BolC9t58608H Brassica oleracea HOM05D001636 ORTHO05D009134 5.3e-06 56.2 166 27.7
Carub.0007s1746 Capsella rubella HOM05D001456 ORTHO05D011865 5.3e-06 56.2 167 28.1
Dinv30943 Davidia involucrata HOM05D001456 ORTHO05D002799 5.3e-06 56.2 165 26.7
Phvul.001G222300 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 5.3e-06 56.2 183 26.8
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 5.3e-06 56.2 198 27.3
TAR365G0880 Trochodendron aralioides HOM05D001456 ORTHO05D002799 5.3e-06 56.2 189 25.9
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 6.9e-06 55.8 238 23.9
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 6.9e-06 55.8 165 26.1
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 6.9e-06 55.8 109 33.0
C07p49280 Brassica napus HOM05D001636 ORTHO05D009134 6.9e-06 55.8 159 25.8
Potri.005G003800 Populus trichocarpa HOM05D001456 ORTHO05D002799 6.9e-06 55.8 165 26.7
Potri.013G003100 Populus trichocarpa HOM05D001456 ORTHO05D002799 6.9e-06 55.8 173 25.4
Sabra13G0002700 Salix brachista HOM05D001456 ORTHO05D002799 6.9e-06 55.8 168 24.4
Carub.0007s1646 Capsella rubella HOM05D001456 ORTHO05D011865 9.1e-06 55.5 137 28.5
MELO3C005198.2 Cucumis melo HOM05D001456 ORTHO05D002799 9.1e-06 55.5 205 25.4
FAN28G1216 Fragaria x ananassa HOM05D001456 ORTHO05D002799 9.1e-06 55.5 176 25.0
Sabra05G0001000 Salix brachista HOM05D001456 ORTHO05D002799 9.1e-06 55.5 165 26.7
Sabra05G0015100 Salix brachista HOM05D001456 ORTHO05D002799 9.1e-06 55.5 165 26.7
Sabra13G0002500 Salix brachista HOM05D001456 ORTHO05D002799 9.1e-06 55.5 179 25.7
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 9.1e-06 55.5 197 25.4


User provided reference genes

Program Settings