Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 4.9e-111 404.4 198 100.0
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 4.1e-110 401.4 198 99.5
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 1.2e-106 389.8 198 95.5
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 4.1e-102 374.8 205 91.7
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 9.2e-102 373.6 202 92.6
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 1.6e-101 372.9 201 94.0
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 1.6e-101 372.9 201 94.0
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 1.6e-101 372.9 201 94.0
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 6.0e-101 370.9 201 93.5
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 2.3e-100 369.0 204 91.2
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 2.3e-100 369.0 204 91.2
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 1.1e-97 360.1 202 89.1
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 1.1e-97 360.1 205 90.2
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 2.2e-95 352.4 204 87.7
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 9.0e-81 303.9 203 77.3
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 3.2e-78 295.4 204 75.0
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 3.8e-71 271.9 203 68.5
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 5.5e-70 268.1 201 71.1
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 7.1e-70 267.7 198 70.7
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 1.2e-69 266.9 198 71.2
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 1.2e-69 266.9 198 71.2
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 4.6e-69 265.0 202 69.8
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 7.9e-69 264.2 200 71.5
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.0e-68 263.8 198 69.2
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.0e-68 263.8 198 70.7
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.0e-68 263.8 198 70.7
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.3e-68 263.5 198 70.7
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 1.3e-68 263.5 202 68.8
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 2.3e-68 262.7 206 68.9
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 3.9e-68 261.9 200 71.0
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 3.9e-68 261.9 198 69.2
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 3.9e-68 261.9 200 69.5
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 5.1e-68 261.5 198 68.2
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 6.7e-68 261.2 183 74.3
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 8.7e-68 260.8 198 68.7
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 8.7e-68 260.8 198 68.7
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 8.7e-68 260.8 198 68.7
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 8.7e-68 260.8 183 74.3
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 1.1e-67 260.4 200 71.0
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 1.5e-67 260.0 199 70.4
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 1.9e-67 259.6 207 67.1
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 2.5e-67 259.2 198 68.7
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 2.5e-67 259.2 198 67.7
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.5e-67 259.2 198 68.7
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 2.5e-67 259.2 198 69.7
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 2.5e-67 259.2 202 66.8
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 2.5e-67 259.2 183 72.1
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 2.5e-67 259.2 197 70.6
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 3.3e-67 258.8 199 70.9
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 4.3e-67 258.5 199 69.3
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 4.3e-67 258.5 201 69.2
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 5.6e-67 258.1 197 70.6
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 5.6e-67 258.1 199 68.8
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 7.4e-67 257.7 184 73.4
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.3e-66 256.9 199 69.8
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 1.6e-66 256.5 190 70.5
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 1.6e-66 256.5 199 67.3
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 2.8e-66 255.8 198 68.7
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 2.8e-66 255.8 200 68.0
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 6.2e-66 254.6 200 67.5
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 8.1e-66 254.2 185 71.4
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 2.4e-65 252.7 199 66.3
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 2.4e-65 252.7 199 69.3
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 2.4e-65 252.7 198 68.2
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 3.1e-65 252.3 201 67.2
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 4.0e-65 251.9 200 67.5
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 4.0e-65 251.9 198 68.2
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 5.3e-65 251.5 208 65.4
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 6.9e-65 251.1 190 68.4
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 1.5e-64 250.0 199 66.3
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 3.4e-64 248.8 190 67.9
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 4.5e-64 248.4 203 67.0
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 4.5e-64 248.4 203 67.0
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 4.5e-64 248.4 203 67.0
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 7.6e-64 247.7 198 65.7
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.0e-63 247.3 183 69.9
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 2.2e-63 246.1 199 67.3
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 2.2e-63 246.1 199 67.3
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 2.2e-63 246.1 190 66.3
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 2.9e-63 245.7 204 63.7
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 3.8e-63 245.4 198 64.6
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 4.9e-63 245.0 183 67.8
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 1.4e-62 243.4 198 64.6
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.5e-62 242.7 190 67.4
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 2.5e-62 242.7 175 70.3
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 4.2e-62 241.9 189 67.7
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 2.1e-61 239.6 192 64.6
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 2.3e-60 236.1 186 63.4
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 2.3e-60 236.1 186 63.4
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 5.1e-60 235.0 183 69.4
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 1.5e-59 233.4 198 63.1
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 8.2e-58 227.6 208 60.6
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 2.4e-57 226.1 181 64.1
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 9.0e-57 224.2 188 61.2
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.5e-56 223.4 203 63.5
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 8.7e-52 207.6 172 66.9
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.7e-51 204.9 183 59.0
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 2.4e-49 199.5 153 68.0
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.7e-47 193.4 159 66.0
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 2.2e-47 193.0 159 64.8
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 2.2e-42 176.4 184 51.6
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.6e-40 169.5 183 49.7
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.2e-39 166.4 181 48.6
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.6e-37 160.2 196 45.9
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.1e-33 147.5 182 47.8
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 3.8e-31 139.0 105 68.6
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 8.5e-31 137.9 114 61.4
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.1e-30 137.5 114 61.4
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 1.9e-30 136.7 130 55.4
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.4e-27 125.6 181 43.1
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 4.7e-21 105.5 131 47.3
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 1.0e-15 87.8 56 78.6
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 3.8e-15 85.9 63 68.3
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 4.9e-10 68.9 46 71.7
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 6.3e-10 68.6 47 70.2


User provided reference genes

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