Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 9.8e-74 280.0 140 100.0
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 7.3e-69 263.8 140 95.0
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 1.0e-62 243.4 140 84.3
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 1.0e-62 243.4 140 87.9
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 3.9e-62 241.5 140 86.4
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 5.0e-62 241.1 140 85.7
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 5.0e-62 241.1 140 85.7
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 5.0e-62 241.1 140 85.7
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 1.5e-61 239.6 140 86.4
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 3.3e-61 238.4 140 85.7
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 1.6e-60 236.1 140 85.0
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 2.8e-60 235.3 140 85.0
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 1.1e-59 233.4 140 84.3
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 3.1e-59 231.9 141 83.0
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 8.9e-59 230.3 141 83.7
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 2.0e-58 229.2 141 83.7
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 1.3e-54 216.5 137 79.6
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 1.3e-54 216.5 141 81.6
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 1.2e-47 193.4 128 70.3
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 1.6e-47 193.0 135 70.4
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 3.5e-47 191.8 135 67.4
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 3.5e-47 191.8 137 67.9
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 2.3e-46 189.1 132 70.5
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 3.0e-46 188.7 132 69.7
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 8.6e-46 187.2 126 72.2
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 1.9e-45 186.0 134 67.9
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 4.3e-45 184.9 131 68.7
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 4.3e-45 184.9 132 68.2
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 1.2e-44 183.3 131 67.2
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 2.1e-44 182.6 135 63.7
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 2.1e-44 182.6 130 67.7
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 2.8e-44 182.2 130 68.5
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 2.8e-44 182.2 130 68.5
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 2.8e-44 182.2 130 68.5
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 2.8e-44 182.2 126 69.8
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 2.8e-44 182.2 126 69.0
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 3.6e-44 181.8 102 82.4
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 4.7e-44 181.4 126 70.6
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 6.2e-44 181.0 126 69.0
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 1.8e-43 179.5 132 67.4
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 3.1e-43 178.7 130 66.9
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 5.2e-43 177.9 102 79.4
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 8.9e-43 177.2 135 61.5
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 8.9e-43 177.2 126 65.1
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.2e-42 176.8 133 65.4
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 1.5e-42 176.4 135 63.7
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 1.5e-42 176.4 132 66.7
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 2.0e-42 176.0 102 78.4
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 2.0e-42 176.0 125 67.2
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.6e-42 175.6 130 65.4
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 4.4e-42 174.9 131 65.6
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 5.8e-42 174.5 102 76.5
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 5.8e-42 174.5 132 65.2
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 7.6e-42 174.1 102 77.5
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 7.6e-42 174.1 102 75.5
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 9.9e-42 173.7 129 63.6
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 9.9e-42 173.7 126 68.3
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 9.9e-42 173.7 127 65.4
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 9.9e-42 173.7 102 74.5
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 9.9e-42 173.7 102 74.5
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.3e-41 173.3 126 65.1
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 1.7e-41 172.9 131 65.6
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 2.9e-41 172.2 132 66.7
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.9e-41 172.2 132 63.6
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 2.9e-41 172.2 131 64.1
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.9e-41 172.2 140 61.4
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 3.8e-41 171.8 102 75.5
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 4.9e-41 171.4 102 78.4
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 4.9e-41 171.4 102 78.4
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 6.4e-41 171.0 100 76.0
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 1.1e-40 170.2 102 74.5
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 1.1e-40 170.2 102 75.5
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 1.1e-40 170.2 102 75.5
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 1.4e-40 169.9 102 73.5
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 1.9e-40 169.5 102 73.5
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 1.9e-40 169.5 130 60.8
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 2.4e-40 169.1 133 63.9
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.2e-40 168.7 132 62.9
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 4.2e-40 168.3 102 76.5
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 4.2e-40 168.3 102 75.5
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 5.4e-40 167.9 102 73.5
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 7.1e-40 167.5 118 66.9
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 9.3e-40 167.2 102 75.5
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 9.3e-40 167.2 132 62.1
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 9.3e-40 167.2 102 73.5
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 9.3e-40 167.2 102 71.6
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.2e-39 166.8 102 72.5
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 2.1e-39 166.0 102 74.5
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 2.7e-39 165.6 133 64.7
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 3.5e-39 165.2 102 72.5
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 4.6e-39 164.9 102 75.5
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 6.0e-39 164.5 102 72.5
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 1.0e-38 163.7 125 64.8
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 1.3e-38 163.3 98 75.5
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 1.3e-38 163.3 102 70.6
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 2.3e-38 162.5 102 72.5
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 3.0e-38 162.2 103 68.0
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 3.9e-38 161.8 102 72.5
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 1.1e-37 160.2 124 63.7
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 1.9e-37 159.5 102 69.6
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 3.3e-37 158.7 96 75.0
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 4.3e-37 158.3 102 70.6
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.8e-35 152.9 180 47.2
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 1.8e-35 152.9 102 67.6
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 5.8e-34 147.9 136 53.7
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.3e-33 146.7 132 56.8
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 1.7e-33 146.4 107 67.3
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 3.8e-33 145.2 111 63.1
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 4.9e-33 144.8 84 78.6
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 4.9e-33 144.8 102 64.7
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 6.4e-33 144.4 83 80.7
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 1.6e-31 139.8 168 47.6
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 2.7e-31 139.0 135 53.3
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.9e-30 135.2 133 54.1
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 6.7e-30 134.4 81 71.6
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.1e-27 125.6 84 66.7
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 3.1e-27 125.6 107 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 1.7e-25 119.8 100 51.0
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 5.5e-24 114.8 100 49.0
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 2.3e-22 109.4 61 80.3
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 3.9e-22 108.6 97 48.5
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 1.4e-19 100.1 61 70.5
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 5.3e-19 98.2 98 45.9
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 5.3e-19 98.2 61 70.5
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 3.8e-17 92.0 61 67.2
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 1.0e-14 84.0 85 44.7
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 1.1e-13 80.5 49 73.5
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 2.5e-13 79.3 42 85.7
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 1.6e-12 76.6 91 47.3
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.7e-12 75.5 72 56.9
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 6.3e-12 74.7 65 58.5
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 1.4e-11 73.6 57 54.4
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 4.1e-11 72.0 70 55.7
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 4.5e-10 68.6 44 63.6
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 8.5e-09 64.3 34 82.4
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 8.5e-09 64.3 101 29.7
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 7.2e-08 61.2 96 32.3
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.6e-07 60.1 36 69.4


User provided reference genes

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