Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 0.0e+00 1248.4 689 100.0
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 0.0e+00 1222.6 690 97.2
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 0.0e+00 1188.7 691 94.8
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 0.0e+00 1176.4 691 94.5
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 0.0e+00 1174.8 693 94.1
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 0.0e+00 1171.4 692 93.2
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1164.4 691 91.9
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1152.1 691 91.9
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1150.6 691 91.8
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1140.6 692 91.6
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 0.0e+00 1125.2 690 91.2
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1118.6 692 90.3
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1117.4 689 90.1
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1117.1 692 90.2
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1107.8 690 89.0
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1107.4 691 89.7
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 0.0e+00 1100.9 690 87.1
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1099.3 690 88.7
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1099.3 690 88.7
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1091.3 722 85.9
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.9e-297 1023.8 689 80.0
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.9e-297 1023.8 689 79.8
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.0e-296 1020.8 689 79.5
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 5.0e-296 1020.8 689 80.8
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 6.5e-296 1020.4 689 80.4
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 8.5e-296 1020.0 687 80.6
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.2e-294 1016.1 687 80.3
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.7e-294 1014.2 687 80.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.8e-293 1012.3 689 80.0
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 8.8e-293 1010.0 689 80.0
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 5.7e-292 1007.3 689 79.0
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.7e-291 1005.7 689 79.7
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 6.3e-291 1003.8 689 79.8
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.1e-290 1003.0 691 79.7
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 1.8e-290 1002.3 680 79.9
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 4.5e-289 997.7 693 78.9
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.7e-288 995.7 693 78.9
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.2e-288 995.3 689 78.8
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 2.9e-288 995.0 682 77.6
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.0e-288 994.2 689 78.4
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 8.5e-288 993.4 664 80.7
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.5e-287 992.6 667 81.3
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.9e-287 992.3 689 77.9
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.2e-286 989.6 689 78.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 2.7e-286 988.4 689 78.7
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 2.7e-286 988.4 683 79.1
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 3.6e-286 988.0 655 80.8
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.7e-286 987.6 689 77.9
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 6.1e-286 987.3 668 78.3
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 8.0e-286 986.9 749 72.9
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.0e-285 986.5 689 77.1
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.0e-285 986.5 749 72.9
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.4e-285 986.1 687 79.6
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.4e-285 986.1 683 80.2
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 6.8e-285 983.8 689 78.4
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.2e-284 983.0 683 79.2
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.2e-284 983.0 686 78.0
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.5e-284 982.6 685 78.4
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 3.4e-284 981.5 686 77.6
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 3.4e-284 981.5 667 80.5
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 9.8e-284 979.9 652 80.8
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.3e-283 979.5 686 77.7
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 2.2e-283 978.8 674 78.2
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.3e-283 977.2 686 77.3
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 8.3e-283 976.9 689 75.2
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 8.3e-283 976.9 689 78.8
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 5.4e-282 974.2 674 78.2
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 3.5e-281 971.5 689 78.2
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 3.8e-280 968.0 693 76.6
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.9e-279 965.7 688 77.6
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 4.3e-279 964.5 689 76.2
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 3.6e-278 961.4 691 76.1
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.3e-277 958.7 686 76.8
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.2e-276 956.4 669 77.6
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.2e-276 956.4 660 79.2
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.6e-276 955.3 683 76.7
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.7e-275 952.6 684 77.0
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 2.9e-275 951.8 685 78.0
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 4.9e-275 951.0 681 77.5
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 8.3e-275 950.3 735 72.4
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.7e-273 945.3 738 71.7
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 7.8e-273 943.7 687 76.6
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 3.3e-271 938.3 733 71.2
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 5.4e-266 921.0 689 74.5
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.0e-264 916.8 655 76.3
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.7e-264 916.0 681 71.8
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.9e-264 914.8 689 73.0
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.9e-263 912.5 689 72.9
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 3.6e-262 908.3 686 72.2
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.6e-262 908.3 680 73.2
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.6e-260 902.1 641 77.4
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 9.8e-260 900.2 699 72.4
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 3.2e-258 895.2 689 71.8
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.4e-258 894.4 736 68.8
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 7.1e-258 894.0 689 72.6
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.6e-257 892.9 689 72.4
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.5e-255 886.3 689 72.0
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 3.6e-254 881.7 687 73.7
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 2.6e-252 875.5 686 71.1
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 7.6e-252 874.0 1039 52.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 4.1e-250 868.2 613 79.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.5e-247 859.8 703 68.8
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 4.7e-246 854.7 578 80.1
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.4e-245 852.4 620 75.5
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.2e-245 851.3 724 67.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.9e-245 850.5 716 67.3
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.4e-242 843.2 657 71.4
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 3.3e-239 832.0 669 68.9
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.6e-239 831.2 687 67.0
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.4e-235 817.4 737 64.5
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 5.4e-234 814.7 684 67.1
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 3.3e-231 805.4 648 68.8
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 9.6e-215 750.7 667 63.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 5.5e-210 734.9 703 61.5
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 5.5e-210 734.9 556 74.8
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.6e-209 733.4 651 61.8
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.8e-205 719.9 648 61.0
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-202 710.3 654 62.1
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.1e-162 577.8 701 50.5
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.5e-159 567.4 403 77.9
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 9.8e-159 564.7 427 73.5
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 8.1e-145 518.5 368 74.7
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.4e-133 481.1 342 71.6
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 4.6e-132 476.1 570 51.2
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.8e-107 394.4 420 58.3
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 6.5e-94 349.4 504 47.6
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 1.5e-90 338.2 513 47.0
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 4.5e-79 300.1 720 32.1
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.4e-74 283.5 278 60.1
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.7e-49 201.8 779 30.2
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.0e-46 192.6 185 61.1
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 2.9e-46 191.0 565 32.0
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 6.6e-46 189.9 130 76.9
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 5.6e-45 186.8 108 84.3
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.6e-44 184.1 156 66.7
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.0e-38 164.5 94 86.2
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 5.4e-32 143.7 621 26.2
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.7e-28 130.6 91 75.8
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 4.6e-23 114.0 668 21.9
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.1e-19 101.3 71 76.1
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 2.2e-17 95.1 105 63.8
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 6.6e-14 83.6 685 22.6
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 4.7e-12 77.4 779 18.5
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 8.1e-12 76.6 78 62.8
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 4.4e-10 70.9 78 61.5
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 4.4e-10 70.9 76 52.6
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 7.6e-10 70.1 70 57.1
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 1.1e-08 66.2 47 74.5


User provided reference genes

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