Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 0.0e+00 1741.1 857 100.0
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 0.0e+00 1560.8 859 89.5
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 0.0e+00 1474.9 857 85.4
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 0.0e+00 1321.6 862 75.4
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 0.0e+00 1299.3 863 76.7
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 0.0e+00 1286.9 861 74.1
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 0.0e+00 1180.2 869 70.0
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1141.3 867 67.8
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 0.0e+00 1135.2 870 67.4
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 0.0e+00 1131.7 870 66.7
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1130.9 869 66.5
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.2e-299 1033.1 727 70.4
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 7.0e-239 831.2 896 52.0
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 5.6e-220 768.5 685 59.3
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 7.8e-198 694.9 919 44.3
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.4e-194 683.3 903 42.6
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 1.7e-192 677.2 898 43.7
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.8e-192 676.0 903 42.5
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.9e-191 673.7 899 42.7
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.0e-181 639.8 927 42.5
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 1.6e-179 634.0 926 41.3
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 2.1e-179 633.6 935 42.2
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.4e-178 630.9 888 41.9
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.6e-177 626.7 919 42.0
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 7.6e-177 625.2 924 41.0
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.4e-175 620.9 898 42.3
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 4.6e-174 615.9 926 40.3
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 4.3e-172 609.4 920 41.0
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 7.4e-172 608.6 920 41.0
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.3e-171 607.8 921 41.4
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 1.6e-171 607.4 903 40.9
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 4.5e-169 599.4 912 40.6
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.3e-168 597.8 906 41.3
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 2.9e-168 596.7 883 41.3
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 4.2e-167 592.8 920 41.0
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.6e-166 590.9 891 41.4
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 6.0e-166 589.0 779 43.4
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.1e-164 584.7 894 40.4
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 1.3e-163 581.3 913 38.6
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 1.8e-162 577.4 903 39.0
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 3.4e-161 573.2 894 38.9
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.8e-161 572.4 714 43.7
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 5.0e-160 569.3 902 38.8
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 6.5e-160 568.9 918 37.9
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.5e-156 557.0 894 40.3
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 9.7e-156 555.1 923 39.1
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 5.9e-153 545.8 917 37.6
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 8.5e-152 542.0 911 37.8
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 3.2e-151 540.0 900 37.2
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 4.2e-151 539.7 813 40.0
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 1.1e-148 531.6 916 37.1
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.7e-147 527.7 918 38.3
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 3.7e-147 526.6 818 38.9
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 6.9e-146 522.3 775 40.4
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 3.8e-144 516.5 907 36.9
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 3.8e-144 516.5 900 36.4
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.4e-143 514.6 916 37.1
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 4.2e-143 513.1 889 36.2
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.2e-142 511.5 917 36.3
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 2.1e-142 510.8 778 39.2
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 3.6e-142 510.0 881 37.1
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 6.1e-142 509.2 941 35.4
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 1.0e-141 508.4 914 35.7
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 9.4e-135 485.3 724 41.2
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 2.3e-133 480.7 902 35.0
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 2.0e-132 477.6 874 35.6
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.3e-131 474.9 877 36.9
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 3.7e-131 473.4 913 34.5
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 8.5e-128 462.2 914 34.9
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 3.6e-126 456.8 810 36.3
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.0e-125 455.3 762 37.0
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 6.8e-125 452.6 336 69.9
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 3.7e-123 446.8 949 34.1
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 4.8e-123 446.4 916 34.1
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 5.4e-122 443.0 902 33.4
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.7e-120 438.0 904 34.2
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.5e-119 434.1 884 33.5
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.2e-119 433.7 790 35.8
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 2.3e-117 427.6 888 34.5
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 2.3e-117 427.6 907 34.6
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 4.1e-114 416.8 882 33.9
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.5e-113 413.7 889 33.1
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.1e-111 408.7 912 31.7
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 5.7e-108 396.4 917 31.4
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 3.2e-106 390.6 920 31.3
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.1e-106 390.2 916 32.4
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 2.7e-105 387.5 895 32.1
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 7.8e-105 386.0 747 36.4
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.5e-103 381.7 926 31.2
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 8.3e-99 365.9 921 31.4
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.1e-98 365.5 279 68.1
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.1e-98 363.6 932 31.4
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.2e-97 362.1 928 30.9
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 3.0e-96 357.5 882 30.5
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.6e-94 351.7 939 30.6
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 4.6e-89 333.6 576 37.2
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 5.6e-87 326.6 279 58.8
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 5.6e-87 326.6 279 58.8
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.8e-86 324.3 817 30.7
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 3.6e-86 323.9 824 31.3
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 4.4e-84 317.0 777 32.4
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.3e-83 315.5 663 32.6
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.1e-82 312.4 434 44.2
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.1e-79 302.4 241 66.4
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.2e-78 298.9 206 68.9
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 3.8e-75 287.3 529 34.6
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 6.9e-69 266.5 920 28.4
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 3.4e-68 264.2 894 28.0
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.9e-67 261.2 303 49.2
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.7e-64 251.9 803 26.9
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.9e-64 250.8 659 30.0
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 6.2e-62 243.4 403 35.7
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.3e-61 240.4 846 27.1
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 4.0e-53 214.2 812 25.6
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.1e-45 188.0 456 31.4
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.3e-45 187.2 555 26.5
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.0e-44 185.3 448 32.6
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 5.0e-43 180.6 526 29.3
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 3.5e-41 174.5 485 28.7
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.8e-37 162.2 788 25.1
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 2.0e-36 158.7 446 29.1
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 2.1e-33 148.7 201 38.3
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.6e-33 147.5 674 24.5
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 1.4e-32 146.0 178 43.3
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-31 142.5 450 28.0
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 2.0e-31 142.1 337 31.5
BcaB06g25878 Brassica carinata HOM05D004345 ORTHO05D005192 7.4e-31 140.2 107 68.2
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.5e-28 131.0 349 27.2
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.2e-26 124.8 518 27.6
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.7e-25 121.7 380 25.8
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 6.1e-25 120.6 380 25.5
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 2.3e-24 118.6 72 75.0
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 5.7e-23 114.0 479 26.9
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 9.1e-21 106.7 170 42.9
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-18 99.8 409 28.6
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 4.0e-16 91.3 60 63.3
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.3e-14 86.3 534 21.0
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.8e-13 82.4 467 24.4
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 3.5e-12 78.2 484 21.1
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.9e-12 77.4 303 25.1
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.5e-11 73.6 195 31.3
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.9e-10 72.4 94 37.2
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 4.2e-10 71.2 116 38.8
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.8e-08 63.9 125 34.4
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.6e-07 62.0 219 29.2
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.8e-07 60.1 191 29.8


User provided reference genes

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