Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 1.1e-139 500.0 254 100.0
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 2.5e-136 488.8 254 97.2
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 1.7e-132 476.1 254 94.5
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 4.2e-131 471.5 254 93.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.3e-129 465.7 254 90.9
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.3e-129 465.7 254 90.9
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 6.6e-129 464.2 254 91.3
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 6.6e-129 464.2 254 90.9
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 2.5e-128 462.2 254 90.9
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 2.5e-128 462.2 254 90.9
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 3.3e-128 461.8 254 90.2
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 3.3e-128 461.8 254 90.2
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 3.3e-128 461.8 254 90.2
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 5.6e-128 461.1 254 90.9
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 5.6e-128 461.1 254 90.6
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 1.3e-127 459.9 254 90.6
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 2.1e-127 459.1 254 90.9
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 7.6e-117 424.1 246 85.4
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 6.5e-116 421.0 236 88.1
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 1.1e-96 357.1 246 70.3
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 1.1e-96 357.1 246 69.1
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 4.1e-94 348.6 245 68.6
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 2.6e-93 345.9 249 67.9
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 3.4e-93 345.5 244 68.4
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 6.5e-92 341.3 247 66.8
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 1.1e-91 340.5 247 66.8
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 1.9e-91 339.7 247 67.2
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 1.6e-90 336.7 246 66.3
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 1.0e-89 334.0 244 68.9
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 1.4e-89 333.6 254 69.3
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 2.3e-89 332.8 247 68.8
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 3.9e-89 332.0 244 68.9
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 5.1e-89 331.6 246 69.9
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 2.6e-88 329.3 248 68.5
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 3.3e-88 328.9 279 60.2
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 7.4e-88 327.8 244 66.4
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 3.7e-87 325.5 244 66.0
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 4.8e-87 325.1 248 65.3
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 8.2e-87 324.3 246 69.1
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 1.8e-86 323.2 246 68.7
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 2.6e-85 319.3 244 65.2
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 5.9e-85 318.2 246 67.9
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 7.7e-85 317.8 252 64.7
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 7.7e-85 317.8 252 64.7
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 7.7e-85 317.8 236 70.8
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 2.2e-84 316.2 243 65.0
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 5.0e-84 315.1 244 64.8
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 1.9e-83 313.2 243 63.4
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 2.5e-83 312.8 247 62.8
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 4.2e-83 312.0 243 63.0
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 9.4e-83 310.8 249 64.7
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 1.6e-82 310.1 244 63.1
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 1.6e-82 310.1 242 64.0
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 3.6e-82 308.9 246 61.8
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 3.6e-82 308.9 241 63.9
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 3.6e-82 308.9 248 61.3
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 4.7e-82 308.5 246 67.1
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 4.7e-82 308.5 246 64.6
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 2.3e-81 306.2 243 64.2
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 4.0e-81 305.4 236 68.2
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 4.0e-81 305.4 239 64.0
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 5.2e-81 305.1 248 62.9
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 2.0e-80 303.1 243 61.7
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 2.6e-80 302.8 249 64.3
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 2.6e-80 302.8 241 64.7
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 2.6e-80 302.8 244 62.3
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 3.3e-80 302.4 245 62.4
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 5.7e-80 301.6 241 63.9
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 7.5e-80 301.2 240 63.8
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 2.2e-79 299.7 243 62.1
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 2.2e-79 299.7 243 62.1
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 2.8e-79 299.3 247 61.1
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 8.2e-79 297.7 242 62.4
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 8.2e-79 297.7 254 61.4
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 8.2e-79 297.7 248 60.9
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 8.2e-79 297.7 245 60.4
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 8.2e-79 297.7 237 64.1
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 1.8e-78 296.6 241 63.1
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 4.1e-78 295.4 243 62.1
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 4.1e-78 295.4 244 61.1
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 4.1e-78 295.4 243 61.3
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 5.3e-78 295.0 242 61.6
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 7.0e-78 294.7 243 62.1
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 1.3e-76 290.4 249 59.8
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 2.5e-75 286.2 242 62.4
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 6.1e-74 281.6 242 57.9
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 2.0e-72 276.6 219 61.6
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 2.0e-72 276.6 252 57.9
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 2.6e-72 276.2 191 70.2
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 1.3e-71 273.9 249 57.4
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 6.3e-71 271.6 240 59.6
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 8.3e-71 271.2 237 59.9
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 7.0e-70 268.1 239 57.7
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 9.1e-70 267.7 247 56.7
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 9.1e-70 267.7 236 60.2
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 5.0e-68 261.9 234 57.7
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 1.1e-67 260.8 239 56.5
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 2.7e-66 256.1 241 57.3
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.4e-65 253.8 239 57.7
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 2.3e-65 253.1 236 55.1
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 2.3e-65 253.1 236 58.1
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 8.8e-65 251.1 190 64.7
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 2.0e-64 250.0 236 57.2
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 5.7e-64 248.4 236 57.6
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.8e-63 246.1 240 56.2
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 4.1e-62 242.3 236 52.5
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 1.6e-61 240.4 314 45.5
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 3.5e-61 239.2 207 61.8
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 1.7e-60 236.9 190 64.7
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 8.0e-58 228.0 190 63.7
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 2.9e-55 219.5 232 50.4
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 1.1e-54 217.6 240 47.5
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 7.8e-53 211.5 246 50.4
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 1.5e-48 197.2 221 48.9
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 5.8e-48 195.3 166 61.4
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.2e-45 187.6 138 69.6
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 1.2e-45 187.6 160 59.4
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 2.3e-44 183.3 139 69.1
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 2.5e-43 179.9 234 39.3
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 3.6e-42 176.0 132 66.7
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 3.0e-36 156.4 131 60.3
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 1.4e-30 137.5 78 89.7
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 3.2e-30 136.3 91 79.1
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 1.1e-25 121.3 230 34.3
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 1.1e-25 121.3 228 31.6
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 2.7e-21 106.7 78 65.4
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 3.0e-20 103.2 78 64.1
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 6.6e-20 102.1 60 80.0
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 9.0e-17 91.7 79 54.4
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 3.8e-15 86.3 64 71.9
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 1.0e-12 78.2 47 78.7
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 3.0e-12 76.6 46 78.3


User provided reference genes

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