Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 0.0e+00 1634.8 838 100.0
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 0.0e+00 1582.4 839 96.8
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 0.0e+00 1540.8 838 93.8
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 0.0e+00 1503.0 838 91.3
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 0.0e+00 1500.3 849 91.3
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 0.0e+00 1479.9 849 90.2
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 0.0e+00 1380.9 900 80.1
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1362.4 849 85.4
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1359.7 841 85.9
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1348.6 845 85.0
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1334.7 841 84.5
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1317.0 852 82.2
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1316.6 852 82.4
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1312.0 852 82.2
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1310.0 849 81.6
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1303.5 842 83.0
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1292.7 853 80.9
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1244.2 843 80.2
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 0.0e+00 1221.8 854 74.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1175.6 717 86.2
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 3.7e-277 958.4 871 60.2
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.6e-275 953.0 860 60.1
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.0e-275 952.6 871 59.6
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.1e-273 946.8 866 59.7
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.0e-266 923.7 856 60.2
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.2e-264 916.8 888 57.5
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 6.1e-264 914.4 876 59.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 8.0e-264 914.1 864 58.0
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 3.0e-263 912.1 869 58.8
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 8.9e-263 910.6 866 57.4
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 1.5e-262 909.8 858 59.0
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.4e-262 908.7 856 60.2
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 9.8e-262 907.1 877 57.7
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 2.2e-261 906.0 974 53.3
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.2e-261 906.0 866 56.9
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 2.2e-261 906.0 870 57.9
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 3.7e-261 905.2 855 58.1
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.1e-260 903.7 855 58.0
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.2e-260 902.1 865 56.4
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 2.7e-259 899.0 865 58.8
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 2.3e-258 896.0 868 57.8
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.4e-255 886.7 870 57.2
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.4e-255 886.7 870 57.5
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.8e-255 886.3 860 57.0
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 7.5e-254 880.9 880 56.9
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-253 880.2 870 57.2
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 4.9e-253 878.2 911 55.8
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.9e-252 876.3 869 57.0
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 4.1e-252 875.2 879 56.1
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 4.1e-252 875.2 857 55.7
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-250 870.2 878 56.7
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 3.0e-250 869.0 880 55.0
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 4.3e-249 865.1 769 61.6
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.1e-247 860.5 878 55.6
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 9.8e-246 854.0 875 54.5
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 8.3e-245 850.9 869 55.8
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.1e-244 850.5 866 55.7
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.4e-244 850.1 874 56.2
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.4e-244 850.1 859 55.3
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 3.2e-244 849.0 869 56.5
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 5.4e-244 848.2 874 56.3
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 7.1e-244 847.8 846 56.0
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 7.1e-244 847.8 868 55.1
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.1e-244 847.8 841 55.1
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 9.2e-244 847.4 870 55.6
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.5e-241 840.1 871 55.3
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 2.5e-241 839.3 884 55.0
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 9.5e-241 837.4 893 52.6
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.2e-240 837.0 876 55.6
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.1e-240 836.3 868 54.7
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 2.3e-239 832.8 864 54.5
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.1e-239 832.4 878 54.6
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 4.4e-238 828.6 867 54.4
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.9e-237 825.9 867 53.2
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 4.1e-236 822.0 840 56.2
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 5.4e-236 821.6 858 55.2
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.6e-235 820.1 870 54.5
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.7e-234 816.6 870 53.6
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 5.1e-234 815.1 872 54.6
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 1.5e-233 813.5 943 51.1
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 2.5e-233 812.8 735 61.4
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 4.3e-233 812.0 843 54.1
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 8.1e-232 807.7 753 59.0
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.7e-229 800.0 885 53.2
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 1.1e-228 797.3 844 53.6
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.7e-227 792.7 857 53.2
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.5e-227 792.3 955 49.0
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.1e-226 788.5 843 52.8
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.5e-225 786.9 875 52.6
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 8.1e-224 781.2 858 51.7
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 5.3e-223 778.5 839 53.5
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 6.9e-223 778.1 873 51.9
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 1.2e-222 777.3 720 59.0
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 8.4e-221 771.2 782 55.6
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.7e-219 766.1 876 50.7
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.7e-219 766.1 836 51.8
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 4.6e-219 765.4 850 52.5
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 7.9e-219 764.6 861 51.8
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 6.6e-218 761.5 834 52.2
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.6e-216 756.9 785 56.1
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 6.2e-216 755.0 1035 45.1
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 9.0e-215 751.1 860 52.4
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.5e-214 748.8 729 56.9
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 2.1e-211 740.0 858 51.2
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 5.1e-210 735.3 845 51.1
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 5.3e-207 725.3 906 49.0
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.4e-206 722.6 783 52.7
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.6e-203 712.2 882 47.6
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 6.7e-202 708.4 883 48.0
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.5e-198 697.2 720 54.6
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.2e-197 693.3 549 65.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.5e-196 689.9 797 50.8
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 7.2e-196 688.3 875 46.7
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.4e-191 673.3 810 49.1
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.6e-187 660.6 610 58.4
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 9.7e-185 651.4 857 46.1
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 2.4e-183 646.7 859 46.9
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 9.4e-180 634.8 862 47.4
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.2e-170 602.4 547 59.4
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 6.3e-168 595.5 861 44.1
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.2e-164 582.8 875 43.0
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 4.2e-164 582.8 932 41.1
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.7e-157 560.8 446 67.0
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 2.5e-156 557.0 1108 37.1
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.6e-155 554.3 824 43.0
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 9.8e-153 545.0 870 42.0
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.1e-151 540.0 822 42.6
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 6.6e-149 532.3 766 42.2
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.0e-141 508.4 746 44.0
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 8.6e-133 478.8 592 49.7
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.4e-129 466.8 513 52.0
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 4.6e-126 456.4 864 36.7
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 2.2e-120 437.6 573 48.7
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 4.0e-106 390.2 800 35.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.0e-105 387.9 628 38.1
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 6.0e-102 376.3 545 43.1
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.5e-92 344.4 708 34.0
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 6.2e-91 339.7 421 47.7
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.3e-80 305.4 369 52.0
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-77 295.0 440 45.5
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 5.7e-76 290.0 445 46.3
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 5.7e-76 290.0 445 46.3
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 8.2e-75 286.2 318 51.3
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.1e-66 257.7 278 54.3
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.2e-65 255.8 278 54.3
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 9.4e-55 219.5 176 66.5
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 9.4e-55 219.5 176 66.5
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 8.2e-51 206.5 195 60.5
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.7e-48 198.7 263 47.1
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.7e-40 172.2 186 54.8
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 2.9e-40 171.4 132 69.7
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 4.2e-39 167.5 169 55.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-37 162.5 178 56.2
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 5.4e-34 150.6 140 56.4
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-32 146.0 147 56.5
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 3.9e-24 117.9 212 41.5
BolC2t11814H Brassica oleracea HOM05D004054 ORTHO05D004945 3.3e-23 114.8 143 50.3
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 3.6e-22 111.3 82 73.2
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.6e-22 111.3 339 29.2
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.5e-15 89.4 165 36.4
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 4.3e-15 87.8 101 48.5
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 2.1e-14 85.5 60 73.3
BcaC04g21302 Brassica carinata HOM05D011695 ORTHO05D017500 6.2e-14 84.0 89 55.1
BcaC07g41060 Brassica carinata HOM05D011695 ORTHO05D017500 6.2e-14 84.0 89 55.1
C08p40590 Brassica napus HOM05D011695 ORTHO05D017500 6.2e-14 84.0 89 55.1
C02p41390 Brassica napus HOM05D011695 ORTHO05D017500 4.0e-13 81.3 89 52.8
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 4.0e-13 81.3 156 37.8
BolC8t48037H Brassica oleracea HOM05D011695 ORTHO05D017500 4.4e-12 77.8 89 52.8
C09p61440 Brassica napus HOM05D011695 ORTHO05D017500 7.5e-12 77.0 89 52.8
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 1.3e-11 76.3 41 85.4
C04p24100 Brassica napus HOM05D011695 ORTHO05D017500 1.7e-11 75.9 85 52.9
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 4.9e-11 74.3 219 24.7
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.4e-10 72.8 63 54.0
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 2.4e-10 72.0 48 77.1
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 5.4e-10 70.9 58 55.2
C02p23800 Brassica napus HOM05D000787 ORTHO05D003730 6.0e-09 67.4 58 70.7
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-08 65.5 47 63.8
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 1.9e-07 62.4 85 45.9
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 1.2e-06 59.7 100 42.0


User provided reference genes

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