Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G30110 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 3.8e-94 348.2 183 100.0
AT3G17130 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 5.7e-90 334.3 181 95.6
Carub.0003s1687 Capsella rubella HOM05D001578 ORTHO05D001207 5.2e-83 311.2 182 90.1
CARHR092380 Cardamine hirsuta HOM05D001578 ORTHO05D001207 9.8e-82 307.0 180 87.8
Sp3g15350 Schrenkiella parvula HOM05D001578 ORTHO05D001207 9.2e-80 300.4 181 85.1
BolC5t33672H Brassica oleracea HOM05D001578 ORTHO05D001207 1.0e-78 297.0 180 85.6
A05p32610 Brassica napus HOM05D001578 ORTHO05D001207 1.7e-78 296.2 180 85.6
BraA05t22085Z Brassica rapa HOM05D001578 ORTHO05D001207 1.7e-78 296.2 180 85.6
BcaC05g28823 Brassica carinata HOM05D001578 ORTHO05D001207 1.1e-77 293.5 180 84.4
C05p49310 Brassica napus HOM05D001578 ORTHO05D001207 1.1e-77 293.5 180 84.4
Thhalv10021610m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 2.5e-77 292.4 181 82.3
BcaB04g18931 Brassica carinata HOM05D001578 ORTHO05D001207 3.3e-77 292.0 181 82.9
BcaB04g20863 Brassica carinata HOM05D001578 ORTHO05D001207 2.8e-76 288.9 181 82.9
BcaB06g25805 Brassica carinata HOM05D001578 ORTHO05D001207 1.8e-75 286.2 173 85.5
BraA03t13159Z Brassica rapa HOM05D001578 ORTHO05D001207 4.0e-75 285.0 181 81.8
BcaC01g03785 Brassica carinata HOM05D001578 ORTHO05D001207 1.2e-74 283.5 181 81.2
C03p48660 Brassica napus HOM05D001578 ORTHO05D001207 1.2e-74 283.5 181 81.2
A03p40090 Brassica napus HOM05D001578 ORTHO05D001207 2.0e-74 282.7 181 81.2
BolC3t17144H Brassica oleracea HOM05D001578 ORTHO05D001207 3.7e-73 278.5 189 77.8
BraA01t03778Z Brassica rapa HOM05D001578 ORTHO05D001207 3.7e-73 278.5 181 80.1
A01p37170 Brassica napus HOM05D001578 ORTHO05D001207 6.4e-73 277.7 181 80.1
BolC1t04679H Brassica oleracea HOM05D001578 ORTHO05D001207 2.4e-72 275.8 181 79.6
Aa31LG8G4140 Aethionema arabicum HOM05D001578 ORTHO05D001207 1.5e-66 256.5 181 73.5
BcaC09g48669 Brassica carinata HOM05D001578 ORTHO05D001207 3.7e-57 225.3 181 69.6
THA.LOC104820315 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 6.6e-54 214.5 168 67.3
C01p47110 Brassica napus HOM05D001578 ORTHO05D001207 4.7e-52 208.4 181 66.3
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 1.0e-38 164.1 166 54.8
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 6.2e-36 154.8 173 48.6
Manes.15G002000 Manihot esculenta HOM05D001578 ORTHO05D001207 1.8e-35 153.3 176 50.6
Potri.008G102600 Populus trichocarpa HOM05D001578 ORTHO05D001207 4.0e-35 152.1 175 48.6
Sabra08G0077400 Salix brachista HOM05D001578 ORTHO05D001207 1.2e-34 150.6 176 49.4
Atru.chr4.3054 Acer truncatum HOM05D001578 ORTHO05D001207 6.4e-33 144.8 153 50.3
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 2.4e-32 142.9 175 47.4
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.2e-32 142.1 172 47.1
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 7.1e-32 141.4 183 46.4
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.2e-31 140.6 172 46.5
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.2e-31 140.6 172 46.5
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 1.2e-31 140.6 184 47.3
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 4.6e-31 138.7 198 43.9
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 3.9e-30 135.6 184 43.5
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 5.1e-30 135.2 176 43.8
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 1.1e-29 134.0 182 41.8
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.5e-29 133.7 184 44.0
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 1.9e-29 133.3 185 43.2
Psat0s740g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.9e-29 133.3 191 44.5
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 2.1e-28 129.8 188 41.5
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 3.7e-28 129.0 182 42.3
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 6.2e-28 128.3 187 42.2
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 8.1e-28 127.9 192 41.1
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 1.4e-27 127.1 193 43.0
Lj4g0021583 Lotus japonicus HOM05D001578 ORTHO05D001207 3.1e-27 125.9 192 41.7
Phvul.003G116900 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.1e-27 125.9 195 41.5
Psat1g162120 Pisum sativum HOM05D001578 ORTHO05D001207 4.0e-27 125.6 188 41.0
Glyma.15G138400 Glycine max HOM05D001578 ORTHO05D001207 6.9e-27 124.8 191 39.3
Glyma.09G033700 Glycine max HOM05D001578 ORTHO05D001207 1.2e-26 124.0 188 39.4
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 2.6e-26 122.9 166 42.2
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.6e-26 122.9 166 42.2
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 2.6e-26 122.9 175 42.9
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 3.4e-26 122.5 187 40.6
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 4.5e-26 122.1 169 44.4
VMungo0540G0744 Vigna mungo HOM05D001578 ORTHO05D001207 4.5e-26 122.1 171 41.5
Phvul.006G119800 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 7.6e-26 121.3 153 43.1
TPR.G33864 Trifolium pratense HOM05D001578 ORTHO05D001207 9.9e-26 120.9 190 39.5
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 1.3e-25 120.6 182 40.7
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 4.9e-25 118.6 187 40.1
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 1.1e-24 117.5 174 42.0
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 1.1e-24 117.5 174 42.0
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 1.1e-24 117.5 188 41.0
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 1.4e-24 117.1 183 41.0
Eucgr.H04067 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.9e-24 116.7 151 44.4
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 7.1e-24 114.8 187 38.5
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.2e-23 114.0 188 39.9
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 1.6e-23 113.6 187 37.4
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 2.1e-23 113.2 166 43.4
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 2.7e-23 112.8 184 38.6
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 5.1e-22 108.6 183 38.3
PGR031G2148 Punica granatum HOM05D001578 ORTHO05D001207 6.7e-22 108.2 168 42.3
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 4.3e-21 105.5 181 37.6
TPR.G25409 Trifolium pratense HOM05D001578 ORTHO05D001207 1.6e-20 103.6 185 37.3
Eucgr.B03967 Eucalyptus grandis HOM05D001578 ORTHO05D001207 4.0e-19 99.0 114 44.7
Medtr4g122720 Medicago truncatula HOM05D001578 ORTHO05D001207 1.2e-18 97.4 191 35.1
Ca_21411_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.6e-18 96.3 120 42.5
Psat4g021720 Pisum sativum HOM05D001578 ORTHO05D001207 1.4e-16 90.5 190 35.3
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 7.9e-15 84.7 152 34.2
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.0e-14 84.3 152 34.2
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 3.0e-14 82.8 173 32.4
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 3.0e-14 82.8 182 35.2
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 8.7e-14 81.3 160 35.0
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 4.3e-13 79.0 160 35.0
EL10Ac7g16355 Beta vulgaris HOM05D001578 ORTHO05D001207 5.7e-13 78.6 174 31.0
Gohir.A10G174100 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.7e-13 78.6 158 31.0
Gorai.011G202200 Gossypium raimondii HOM05D001578 ORTHO05D001207 5.7e-13 78.6 153 32.7
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 7.4e-13 78.2 153 31.4
Gohir.D10G180700 Gossypium hirsutum HOM05D001578 ORTHO05D001207 7.4e-13 78.2 153 32.7
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 7.4e-13 78.2 173 33.5
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 9.7e-13 77.8 175 34.9
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 9.7e-13 77.8 152 30.9
AUR62009839 Chenopodium quinoa HOM05D001578 ORTHO05D001207 1.3e-12 77.4 172 30.8
AUR62038151 Chenopodium quinoa HOM05D001578 ORTHO05D001207 1.3e-12 77.4 156 30.1
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 4.8e-12 75.5 155 33.5
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 6.3e-12 75.1 179 31.3
Medtr4g122718 Medicago truncatula HOM05D001578 ORTHO05D001207 6.3e-12 75.1 116 36.2
Atru.chr4.3057 Acer truncatum HOM05D001578 ORTHO05D001207 1.4e-11 73.9 170 33.5
Ah.08g216390 Amaranthus hybridus HOM05D001578 ORTHO05D001207 1.4e-11 73.9 173 28.9
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.4e-11 73.9 164 29.9
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.8e-11 73.6 164 29.9
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 2.4e-11 73.2 186 28.0
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 4.1e-11 72.4 164 29.9
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 6.9e-11 71.6 158 30.4
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 6.9e-11 71.6 175 31.4
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 9.0e-11 71.2 151 29.8
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.2e-10 70.9 171 29.2
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.5e-10 70.5 151 30.5
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 2.6e-10 69.7 159 27.7
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 2.6e-10 69.7 177 31.6
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 3.4e-10 69.3 168 32.1
Eucgr.B03968 Eucalyptus grandis HOM05D001578 ORTHO05D001207 3.4e-10 69.3 115 35.7
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 3.4e-10 69.3 162 31.5
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 4.5e-10 68.9 178 30.3
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 4.5e-10 68.9 173 29.5
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.9e-10 68.6 175 31.4
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 5.9e-10 68.6 175 31.4
Thecc.04G305000 Theobroma cacao HOM05D001578 ORTHO05D001207 5.9e-10 68.6 160 27.5
Atru.chr4.3056 Acer truncatum HOM05D001578 ORTHO05D001207 1.0e-09 67.8 167 31.7
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 1.0e-09 67.8 115 37.4
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.3e-09 67.4 152 27.6
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.7e-09 67.0 179 32.4
Ca_00963_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.9e-09 66.2 92 41.3
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 6.5e-09 65.1 181 30.4
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 6.5e-09 65.1 170 28.2
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 6.5e-09 65.1 170 28.2
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 6.5e-09 65.1 170 28.2
Ciclev10006511m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.1e-08 64.3 177 30.5
MSTRG.24829 Avicennia marina HOM05D001578 ORTHO05D001207 1.4e-08 63.9 166 29.5
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 1.4e-08 63.9 173 27.2
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 1.4e-08 63.9 175 30.3
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 3.2e-08 62.8 146 30.1
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 3.2e-08 62.8 146 30.1
HanXRQChr08g0218241 Helianthus annuus HOM05D004113 ORTHO05D005233 3.2e-08 62.8 177 26.6
Manes.15G098100 Manihot esculenta HOM05D001578 ORTHO05D001207 3.2e-08 62.8 144 31.9
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.2e-08 62.8 127 29.9
Carub.0001s3704 Capsella rubella HOM05D001578 ORTHO05D001207 4.2e-08 62.4 170 27.1
Gohir.A10G174050 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.5e-08 62.0 173 28.9
Oeu004248.1 Olea europaea HOM05D004113 ORTHO05D005233 9.4e-08 61.2 175 27.4
Manes.02G201700 Manihot esculenta HOM05D001578 ORTHO05D001207 1.2e-07 60.8 182 29.1
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 1.6e-07 60.5 154 27.3
Lalb_Chr20g0117771 Lupinus albus HOM05D001578 ORTHO05D001207 1.6e-07 60.5 179 30.7
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 2.1e-07 60.1 124 30.6
CSS0025537 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 2.7e-07 59.7 155 24.5
CSS0050483 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 2.7e-07 59.7 155 24.5
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 6.1e-07 58.5 180 28.9
PSO724G0052 Papaver somniferum HOM05D004113 ORTHO05D005233 7.9e-07 58.2 169 30.2
PSO724G0234 Papaver somniferum HOM05D004113 ORTHO05D005233 7.9e-07 58.2 169 30.2
Actinidia18465 Actinidia chinensis HOM05D001578 ORTHO05D001207 1.0e-06 57.8 160 25.6
RhsimUnG0133000 Rhododendron simsii HOM05D004113 ORTHO05D005233 1.0e-06 57.8 180 28.3
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 1.4e-06 57.4 156 29.5
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 1.4e-06 57.4 154 28.6
PGR004G1767 Punica granatum HOM05D001578 ORTHO05D001207 1.4e-06 57.4 173 27.2
FvH4_4g20440 Fragaria vesca HOM05D001578 ORTHO05D001207 1.8e-06 57.0 144 31.2
FAN12G2021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.8e-06 57.0 144 31.2
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 1.8e-06 57.0 190 28.4
BcaC08g42990 Brassica carinata HOM05D001578 ORTHO05D001207 2.3e-06 56.6 112 33.0
C06p02320 Brassica napus HOM05D001578 ORTHO05D001207 2.3e-06 56.6 112 33.0
MBI19_g08236_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D010044 2.3e-06 56.6 142 31.0
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 3.0e-06 56.2 166 25.9
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 3.9e-06 55.8 159 26.4
Lj6g0013229 Lotus japonicus HOM05D001578 ORTHO05D001207 3.9e-06 55.8 127 32.3
Peaxi162Scf00228g00064 Petunia axillaris HOM05D001578 ORTHO05D001207 3.9e-06 55.8 167 25.1
CARHR037580 Cardamine hirsuta HOM05D001578 ORTHO05D001207 5.1e-06 55.5 158 27.2
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 5.1e-06 55.5 151 27.2
AL1G54460 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 6.7e-06 55.1 160 26.2
BolC6t35358H Brassica oleracea HOM05D001578 ORTHO05D001207 6.7e-06 55.1 106 34.9
Eucgr.L02838 Eucalyptus grandis HOM05D001578 ORTHO05D001207 6.7e-06 55.1 146 30.1
FvH4_4g20430 Fragaria vesca HOM05D001578 ORTHO05D001207 6.7e-06 55.1 146 31.5
MSTRG.24828 Avicennia marina HOM05D001578 ORTHO05D001207 8.8e-06 54.7 166 27.1
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 8.8e-06 54.7 160 28.1
PSO837G0066 Papaver somniferum HOM05D004113 ORTHO05D005233 8.8e-06 54.7 174 27.0
Psat0s2818g0040 Pisum sativum HOM05D001578 ORTHO05D001207 8.8e-06 54.7 170 28.8
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 8.8e-06 54.7 167 26.3


User provided reference genes

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