Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 5.6e-188 661.8 426 100.0
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 6.2e-163 578.6 427 91.3
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 5.3e-154 548.9 424 87.7
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 1.3e-152 544.3 427 86.7
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 3.1e-138 496.5 421 67.9
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 3.4e-137 493.0 434 79.5
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 8.5e-136 488.4 425 67.1
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.0e-133 481.5 422 66.8
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.0e-133 481.5 422 66.8
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 3.3e-132 476.5 424 66.0
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.9e-125 453.0 353 89.2
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 2.6e-124 450.3 420 73.6
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 3.0e-101 373.6 396 66.9
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 8.9e-101 372.1 434 61.3
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 8.9e-101 372.1 396 66.9
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 5.0e-96 356.3 438 63.0
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 2.5e-95 354.0 426 62.7
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 7.5e-92 342.4 374 67.9
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 3.7e-91 340.1 399 63.2
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 4.1e-90 336.7 418 61.5
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 2.3e-88 330.9 388 63.7
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 5.0e-88 329.7 395 64.6
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 3.3e-87 327.0 409 61.9
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 1.8e-85 321.2 425 59.1
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 4.0e-85 320.1 433 58.9
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 1.2e-84 318.5 409 61.4
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 9.8e-84 315.5 430 58.6
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.4e-82 311.6 418 59.8
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 2.7e-81 307.4 423 51.1
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 2.7e-81 307.4 352 63.6
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 3.5e-81 307.0 368 64.1
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 7.8e-81 305.8 393 61.6
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 1.0e-80 305.4 390 60.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.2e-78 298.5 388 59.5
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 2.8e-78 297.4 363 64.7
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.1e-77 295.4 384 60.2
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 8.9e-77 292.4 372 61.6
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 2.0e-76 291.2 391 57.8
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 3.4e-76 290.4 377 60.2
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 6.4e-75 286.2 418 58.6
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 2.4e-74 284.3 397 57.4
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 2.4e-74 284.3 426 56.6
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 7.1e-74 282.7 385 59.0
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 2.7e-73 280.8 352 62.2
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 1.3e-72 278.5 425 57.6
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 3.9e-72 276.9 363 60.6
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 9.5e-71 272.3 372 58.3
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 2.8e-70 270.8 358 62.3
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 8.1e-70 269.2 243 90.1
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 5.2e-69 266.5 333 63.4
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 2.0e-68 264.6 347 61.7
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 9.9e-68 262.3 357 59.9
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.7e-67 261.5 355 60.6
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 2.4e-66 257.7 332 66.0
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 2.4e-66 257.7 384 57.3
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 2.3e-64 251.1 353 60.6
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.1e-63 248.8 168 67.3
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 2.5e-63 247.7 367 61.0
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 2.1e-62 244.6 192 60.9
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 6.2e-62 243.0 178 60.1
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 7.6e-60 236.1 326 60.4
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 2.2e-59 234.6 168 62.5
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 6.4e-59 233.0 195 55.9
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.4e-58 231.1 196 57.1
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.2e-57 228.8 176 59.1
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.6e-57 228.4 167 61.7
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 6.0e-57 226.5 167 59.9
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.3e-56 225.3 167 59.9
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.3e-56 225.3 167 61.1
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 3.0e-56 224.2 169 59.2
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.9e-56 223.8 324 61.4
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 1.1e-55 222.2 213 52.6
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 4.3e-55 220.3 246 47.2
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 8.1e-54 216.1 204 53.4
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 9.0e-53 212.6 159 60.4
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 5.8e-52 209.9 171 55.0
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 5.8e-52 209.9 397 51.9
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 2.9e-51 207.6 167 56.9
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 1.3e-43 182.2 251 68.9
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 3.8e-43 180.6 403 40.9
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.0e-40 172.6 138 57.2
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 1.9e-39 168.3 189 47.6
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.9e-39 168.3 169 49.7
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.1e-37 161.0 112 65.2
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.9e-34 151.8 129 53.5
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 7.9e-33 146.4 127 52.8
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 6.7e-32 143.3 88 73.9
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 5.3e-29 133.7 121 51.2
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 5.3e-29 133.7 121 51.2
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 7.7e-28 129.8 141 44.7
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 6.5e-27 126.7 175 37.1
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 8.5e-27 126.3 359 45.4
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 1.1e-26 125.9 143 46.2
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 1.2e-25 122.5 128 46.1
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.3e-22 112.5 64 85.9
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 2.8e-22 111.3 207 70.5
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.1e-21 107.5 72 69.4
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 5.3e-13 80.5 138 33.3
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.2e-12 79.3 101 40.6
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 2.6e-12 78.2 85 41.2
A05p32770 Brassica napus HOM05D002444 ORTHO05D040376 8.0e-09 66.6 54 55.6
BraA05t22099Z Brassica rapa HOM05D002444 ORTHO05D040376 8.0e-09 66.6 54 55.6
Lsat_1_v5_gn_8_99341 Lactuca sativa HOM05D008470 ORTHO05D010644 1.1e-07 62.8 151 31.8
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 4.4e-07 60.8 126 25.4
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 5.7e-07 60.5 126 26.2
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 7.4e-07 60.1 54 53.7
GSVIVG01013571001 Vitis vinifera HOM05D007128 ORTHO05D009059 7.4e-07 60.1 165 30.9
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 1.3e-06 59.3 122 24.6
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 2.2e-06 58.5 139 22.3
Atru.chr4.3064 Acer truncatum HOM05D007409 ORTHO05D009264 2.8e-06 58.2 167 22.8
Glyma.04G054900 Glycine max HOM05D008470 ORTHO05D010644 2.8e-06 58.2 148 26.4
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 3.7e-06 57.8 132 26.5
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 6.3e-06 57.0 133 27.8
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 6.3e-06 57.0 145 28.3
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 6.3e-06 57.0 132 25.8
SGA_v2.0_scaffold64G22096 Striga asiatica HOM05D007409 ORTHO05D009264 8.2e-06 56.6 173 23.7


User provided reference genes

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