Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 0.0e+00 1366.3 684 100.0
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 0.0e+00 1277.3 684 94.3
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 0.0e+00 1216.1 683 89.9
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 0.0e+00 1138.3 685 85.0
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 0.0e+00 1092.8 687 82.2
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 3.7e-307 1057.7 663 83.0
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 5.3e-306 1053.9 664 82.5
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 3.8e-304 1047.7 665 82.3
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 4.2e-303 1044.3 665 82.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 1.8e-301 1038.9 665 82.3
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 2.5e-300 1035.0 665 81.7
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 1.2e-281 973.0 694 76.7
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.1e-279 966.5 694 76.4
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 7.4e-276 953.7 705 74.0
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 3.5e-273 944.9 694 74.9
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-272 942.6 695 74.7
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 1.2e-265 919.8 659 76.5
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.4e-226 790.0 666 65.5
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 4.9e-203 711.8 440 83.0
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 5.5e-186 655.2 691 55.4
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 3.2e-178 629.4 708 53.4
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 4.6e-177 625.5 701 53.5
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 3.3e-175 619.4 690 54.2
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 4.3e-175 619.0 694 54.5
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 7.4e-175 618.2 692 54.0
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.3e-174 617.5 676 54.7
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 7.7e-172 608.2 608 56.6
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 2.9e-171 606.3 697 53.2
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 6.5e-171 605.1 676 53.8
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 8.5e-171 604.7 681 53.6
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 4.2e-170 602.4 666 54.5
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 5.5e-170 602.1 679 53.3
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.1e-169 600.1 675 52.9
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 2.6e-167 593.2 656 53.2
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 8.2e-166 588.2 679 52.6
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 1.0e-163 581.3 671 52.0
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.3e-163 580.9 679 52.3
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 1.7e-163 580.5 674 51.0
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 4.2e-162 575.9 676 53.3
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.0e-160 571.2 674 50.4
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 1.4e-160 570.9 675 51.0
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 4.0e-160 569.3 680 50.6
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 8.8e-160 568.2 684 50.6
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 1.5e-159 567.4 683 50.7
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.4e-159 565.8 671 50.5
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 5.7e-159 565.5 691 51.4
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 9.7e-159 564.7 686 50.4
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 9.7e-159 564.7 669 51.0
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.3e-158 564.3 683 50.8
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.4e-157 560.8 674 50.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 5.3e-157 558.9 674 50.4
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 7.0e-157 558.5 672 50.0
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.2e-156 557.8 695 49.5
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 2.2e-155 553.5 687 49.3
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 5.0e-155 552.4 668 51.2
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 5.0e-155 552.4 682 50.7
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 5.0e-155 552.4 678 50.9
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 3.2e-154 549.7 694 50.0
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 2.1e-153 547.0 611 53.4
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 8.0e-153 545.0 689 51.1
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.8e-152 543.9 674 50.4
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.3e-152 543.5 643 51.2
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 5.2e-152 542.3 611 53.2
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 6.8e-152 542.0 755 45.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 3.4e-151 539.7 675 49.6
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.3e-150 537.7 627 52.6
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.0e-147 528.1 675 49.0
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.7e-147 527.3 684 49.6
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 2.2e-147 526.9 663 49.0
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.5e-146 524.2 686 48.3
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 2.5e-146 523.5 706 47.9
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.6e-145 520.8 688 48.3
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 2.7e-145 520.0 715 47.7
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 4.7e-145 519.2 702 47.9
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.8e-144 517.3 693 47.9
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 1.8e-144 517.3 678 48.5
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 2.6e-143 513.5 671 49.2
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 1.4e-141 507.7 657 49.2
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.8e-141 507.3 715 46.7
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 2.4e-141 506.9 586 51.4
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.6e-140 504.2 674 48.4
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 4.5e-140 502.7 692 47.1
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 1.7e-139 500.7 714 47.2
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 1.5e-138 497.7 673 47.8
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.9e-138 497.3 695 48.3
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 5.6e-138 495.7 713 46.6
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 5.6e-138 495.7 660 48.8
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.8e-136 490.7 650 49.1
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 1.5e-135 487.6 760 45.0
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.4e-135 486.5 692 46.4
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 2.9e-134 483.4 683 47.3
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 3.7e-134 483.0 672 46.9
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 1.4e-133 481.1 645 48.7
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 7.8e-132 475.3 615 48.1
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.0e-131 474.9 674 46.1
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.3e-130 469.5 687 46.3
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 2.1e-129 467.2 635 47.9
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 6.8e-128 462.2 623 46.7
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.7e-126 457.6 708 45.2
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 3.5e-124 449.9 682 45.7
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.6e-124 449.5 671 45.9
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 6.0e-124 449.1 579 49.2
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 7.8e-124 448.7 697 44.5
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.7e-123 447.6 676 44.2
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 1.1e-120 438.3 685 44.4
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.8e-120 437.6 678 43.2
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.7e-118 431.0 723 42.0
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 2.2e-118 430.6 672 43.5
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.9e-117 427.6 608 46.9
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.3e-115 421.4 637 43.8
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 5.1e-115 419.5 634 44.5
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.1e-109 401.7 242 84.3
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 2.7e-108 397.1 626 42.0
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 1.0e-107 395.2 683 41.1
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 2.8e-105 387.1 752 39.2
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 3.9e-99 366.7 618 40.5
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 2.5e-98 364.0 663 41.6
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 3.5e-92 343.6 699 37.1
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.1e-84 317.8 480 44.4
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.5e-82 310.8 615 37.1
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 6.9e-72 276.2 679 33.1
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 1.1e-69 268.9 664 33.9
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 2.7e-68 264.2 593 36.3
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 3.4e-55 220.7 672 30.4
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 8.2e-49 199.5 672 30.4
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 8.8e-43 179.5 722 27.6
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 7.5e-42 176.4 491 32.6
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.4e-40 172.2 159 58.5
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 7.7e-39 166.4 176 53.4
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.5e-37 162.2 313 38.0
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 3.6e-36 157.5 222 45.5
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 3.0e-27 127.9 131 52.7
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.0e-26 125.2 89 71.9
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 4.1e-24 117.5 133 52.6
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.6e-20 105.5 105 48.6
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 1.5e-18 99.0 582 25.3
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 4.3e-13 80.9 195 27.7
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 4.9e-09 67.4 63 47.6
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 6.0e-07 60.5 87 42.5


User provided reference genes

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