Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 3.6e-126 454.9 227 100.0
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 3.9e-120 434.9 226 95.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 3.9e-120 434.9 226 95.6
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 8.6e-120 433.7 226 95.1
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.2e-118 429.9 227 95.2
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.6e-118 429.5 225 94.7
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.6e-118 429.5 225 94.2
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.4e-117 426.4 225 93.8
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 4.0e-117 424.9 225 94.7
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.5e-111 406.4 224 91.1
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.3e-107 393.3 224 87.1
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.7e-107 391.7 224 87.1
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 8.3e-107 390.6 224 86.2
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 8.3e-107 390.6 224 87.1
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 5.4e-106 387.9 224 85.7
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 7.1e-106 387.5 224 86.2
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.2e-105 386.7 224 86.6
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-105 386.7 224 86.2
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.1e-105 386.0 224 85.7
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.1e-105 386.0 224 85.7
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 6.0e-105 384.4 224 85.3
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.3e-104 382.5 223 84.3
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 4.2e-98 361.7 224 81.2
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 4.2e-98 361.7 224 81.2
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 4.6e-97 358.2 272 70.6
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 6.0e-97 357.8 225 81.3
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.1e-94 349.4 222 76.1
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.4e-93 346.7 222 75.7
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 5.3e-93 344.7 222 76.6
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.4e-92 341.7 220 76.4
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 5.8e-92 341.3 222 75.2
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 9.9e-92 340.5 218 76.1
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.7e-91 339.7 221 73.8
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 1.7e-91 339.7 222 74.8
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.2e-91 339.3 222 74.8
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.9e-91 339.0 222 73.9
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 2.9e-91 339.0 222 74.3
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.8e-91 338.6 222 74.3
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 6.4e-91 337.8 226 73.0
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 6.4e-91 337.8 222 74.3
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 6.4e-91 337.8 218 75.2
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 2.4e-90 335.9 223 74.4
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.2e-90 335.5 222 73.4
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 4.2e-90 335.1 219 73.5
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 5.4e-90 334.7 217 74.7
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 7.1e-90 334.3 257 65.8
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 9.3e-90 334.0 220 73.2
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 9.3e-90 334.0 222 73.0
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.6e-89 333.2 222 72.5
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 6.0e-89 331.3 222 73.9
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 6.0e-89 331.3 223 73.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 6.0e-89 331.3 219 73.5
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.0e-88 330.5 217 74.7
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.7e-88 329.7 219 73.1
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.7e-88 329.7 219 73.1
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 3.0e-88 328.9 222 72.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 3.9e-88 328.6 222 72.5
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 3.9e-88 328.6 220 73.2
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 5.1e-88 328.2 219 71.7
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 8.7e-88 327.4 216 73.6
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 8.7e-88 327.4 223 71.3
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.1e-87 327.0 219 73.1
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.5e-87 326.6 223 72.2
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.5e-87 326.6 219 71.2
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.9e-87 326.2 218 71.6
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.9e-87 326.2 223 71.7
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 2.5e-87 325.9 223 70.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.5e-87 325.9 218 71.6
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 2.5e-87 325.9 222 73.0
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 5.6e-87 324.7 223 72.2
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 5.6e-87 324.7 219 70.8
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 5.6e-87 324.7 224 72.8
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 5.6e-87 324.7 225 71.1
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 7.3e-87 324.3 225 71.1
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 9.6e-87 323.9 219 72.1
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 9.6e-87 323.9 216 74.1
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 2.1e-86 322.8 216 71.8
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 2.8e-86 322.4 222 70.3
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.8e-86 321.6 214 72.4
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 8.1e-86 320.9 219 70.3
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 8.1e-86 320.9 218 73.9
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 8.1e-86 320.9 224 71.0
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.1e-85 320.5 223 71.3
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.4e-85 320.1 217 72.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.4e-85 320.1 223 73.1
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.8e-85 319.7 217 72.8
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 2.4e-85 319.3 217 71.9
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.4e-85 319.3 222 71.2
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.1e-85 318.9 224 70.5
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 5.3e-85 318.2 222 70.3
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 9.0e-85 317.4 217 71.9
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.2e-84 317.0 221 69.2
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 3.4e-84 315.5 214 71.0
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 5.8e-84 314.7 235 67.7
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.3e-83 313.5 219 68.5
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 8.4e-83 310.8 223 68.2
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 2.1e-81 306.2 266 60.9
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.7e-81 305.8 223 66.8
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.9e-80 302.0 215 70.2
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 6.7e-80 301.2 217 68.7
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.5e-79 300.1 222 67.1
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.3e-78 297.0 208 70.2
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.3e-78 297.0 187 77.0
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 4.0e-77 292.0 221 67.4
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.5e-74 282.7 222 62.6
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 4.6e-73 278.5 223 62.3
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.0e-73 278.1 215 65.6
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.0e-73 278.1 216 65.3
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 3.9e-72 275.4 219 62.6
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 6.7e-72 274.6 225 61.3
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.8e-70 269.2 221 62.4
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.8e-69 266.5 178 73.0
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 3.1e-69 265.8 224 60.3
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 5.3e-69 265.0 221 62.0
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.0e-64 249.2 182 67.6
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.1e-58 230.7 201 57.7
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.1e-55 220.7 146 73.3
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.4e-53 213.8 109 97.2
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.0e-52 209.9 229 48.0
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 3.8e-51 205.7 131 74.8
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 2.8e-46 189.5 130 69.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 8.2e-46 188.0 118 83.1
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 4.1e-45 185.7 128 71.9
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 9.1e-45 184.5 125 72.0
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.3e-43 180.6 95 93.7
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.5e-42 177.2 146 60.3
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 7.2e-42 174.9 122 70.5
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.3e-39 166.0 126 65.9
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.6e-36 157.1 92 77.2
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.2e-34 149.4 131 62.6
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.6e-33 147.1 92 75.0
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 7.0e-29 131.7 205 40.5
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.0e-28 130.2 93 68.8
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.3e-27 127.5 165 42.4
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.5e-26 123.2 94 61.7
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 9.4e-26 121.3 93 68.8
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.7e-25 119.8 77 72.7
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.6e-25 119.4 216 35.6
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 8.0e-25 118.2 194 39.7
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.0e-23 113.6 191 36.1
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.6e-23 113.2 195 33.8
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.6e-23 113.2 217 35.5
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 4.1e-21 105.9 197 37.1
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.3e-19 100.1 88 56.8
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 2.3e-19 100.1 71 62.0
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 2.9e-19 99.8 92 59.8
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 6.6e-19 98.6 73 65.8
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.9e-18 97.1 216 32.9
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.5e-18 96.7 215 31.6
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 1.2e-17 94.4 92 56.5
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.6e-17 94.0 67 67.2
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 6.1e-17 92.0 60 70.0
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.3e-16 90.1 174 34.5
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 2.3e-16 90.1 70 58.6
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 9.8e-15 84.7 55 67.3
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.7e-14 84.0 83 54.2
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 2.2e-14 83.6 68 58.8
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 3.7e-14 82.8 56 66.1
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 4.9e-14 82.4 58 70.7
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.1e-13 81.3 46 80.4
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 9.2e-13 78.2 53 71.7
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 8.6e-11 71.6 65 53.8
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 8.6e-11 71.6 65 53.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.1e-10 71.2 64 54.7
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.5e-10 70.1 59 57.6
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 3.3e-10 69.7 66 53.0
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 4.0e-08 62.8 79 41.8
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 8.9e-08 61.6 48 58.3
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.3e-06 57.8 47 57.4


User provided reference genes

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