Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 4.7e-77 291.2 156 100.0
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 6.4e-66 254.2 156 85.9
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 7.9e-48 194.1 157 65.6
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.0e-47 192.2 157 64.3
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-37 159.8 165 55.2
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 3.8e-34 148.7 186 47.8
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.5e-34 147.5 155 52.9
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-33 147.1 155 56.1
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 4.6e-32 141.7 174 50.0
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-30 137.1 155 53.5
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.5e-30 136.7 155 53.5
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.5e-30 136.0 160 48.1
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.5e-27 126.7 176 43.8
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 6.5e-26 121.3 158 48.1
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.7e-24 115.9 150 46.7
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.3e-23 112.8 150 45.3
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.1e-22 110.5 145 46.9
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 2.0e-22 109.8 146 47.3
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 4.4e-22 108.6 149 45.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 7.4e-22 107.8 149 44.3
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 7.4e-22 107.8 147 44.9
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 2.2e-21 106.3 149 43.0
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-21 105.9 149 45.6
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-21 105.9 149 45.6
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.8e-21 105.9 144 44.4
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.8e-21 105.9 149 43.6
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 3.7e-21 105.5 167 41.3
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 6.3e-21 104.8 155 43.9
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-20 104.0 147 45.6
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.1e-20 104.0 147 44.2
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-20 104.0 149 43.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-20 104.0 149 43.0
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.1e-20 104.0 158 44.3
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.1e-20 104.0 147 46.3
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.4e-20 103.6 171 41.5
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.4e-20 103.6 152 44.1
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.4e-20 103.6 152 45.4
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.4e-20 102.8 149 41.6
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 3.1e-20 102.4 146 44.5
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.1e-20 102.4 150 44.7
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 4.1e-20 102.1 167 40.7
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 5.3e-20 101.7 156 41.0
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 7.0e-20 101.3 149 41.6
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 9.1e-20 100.9 144 48.6
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 9.1e-20 100.9 148 45.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.2e-19 100.5 149 45.0
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 4.5e-19 98.6 156 41.7
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 5.9e-19 98.2 148 45.3
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 5.9e-19 98.2 148 45.3
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 5.9e-19 98.2 149 42.3
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 5.9e-19 98.2 187 38.0
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 5.9e-19 98.2 145 45.5
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.0e-18 97.4 148 41.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.7e-18 96.7 149 42.3
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-18 96.7 113 45.1
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-18 96.7 113 45.1
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.2e-18 96.3 145 44.8
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 5.0e-18 95.1 142 43.7
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 6.5e-18 94.7 149 42.3
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.4e-17 93.6 146 42.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.9e-17 93.2 150 42.0
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.5e-17 92.8 157 40.8
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.2e-17 92.4 146 39.7
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-17 92.4 144 41.0
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.2e-17 92.0 145 40.7
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 4.2e-17 92.0 152 42.1
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.5e-17 91.7 147 41.5
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 5.5e-17 91.7 152 40.1
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 5.5e-17 91.7 151 41.7
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 7.2e-17 91.3 139 42.4
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.4e-17 90.9 145 40.7
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.2e-16 90.5 146 40.4
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.1e-16 89.7 172 38.4
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.7e-16 89.4 148 40.5
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.7e-16 89.4 147 39.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 2.7e-16 89.4 139 42.4
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.7e-16 89.4 152 39.5
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.7e-16 88.6 146 42.5
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 6.1e-16 88.2 153 40.5
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 8.0e-16 87.8 148 43.2
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 8.0e-16 87.8 147 41.5
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-15 87.4 146 42.5
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.4e-15 87.0 173 36.4
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.4e-15 87.0 143 38.5
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.0e-15 85.9 143 38.5
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 3.9e-15 85.5 172 37.8
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 3.9e-15 85.5 172 37.8
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 3.9e-15 85.5 172 37.8
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 5.2e-15 85.1 175 37.7
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 6.7e-15 84.7 193 35.2
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.1e-14 84.0 143 37.1
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.0e-14 83.2 149 38.3
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 2.0e-14 83.2 159 38.4
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.6e-14 82.8 141 37.6
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 4.4e-14 82.0 181 35.9
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 7.4e-14 81.3 135 34.1
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 7.4e-14 81.3 150 37.3
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.4e-14 81.3 148 37.8
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-13 80.5 148 37.8
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-13 80.5 119 45.4
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.7e-13 80.1 152 36.8
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-13 79.7 149 37.6
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 6.3e-13 78.2 163 35.0
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 8.2e-13 77.8 110 40.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 8.2e-13 77.8 110 40.0
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 8.2e-13 77.8 141 40.4
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 8.2e-13 77.8 141 36.9
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 8.2e-13 77.8 145 37.2
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 1.1e-12 77.4 194 33.5
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 2.4e-12 76.3 196 33.2
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.4e-12 76.3 144 36.8
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 5.3e-12 75.1 143 37.8
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-11 73.9 138 39.1
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-11 73.6 125 40.8
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 2.0e-11 73.2 115 37.4
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.0e-11 73.2 145 37.2
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 7.7e-11 71.2 130 43.8
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.7e-11 71.2 146 35.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 7.7e-11 71.2 101 45.5
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 7.7e-11 71.2 144 35.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-10 70.9 101 45.5
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.3e-10 70.5 148 37.2
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-10 70.5 145 35.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-10 70.5 101 45.5
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-10 70.1 145 36.6
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.9e-10 69.3 157 32.5
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 2.9e-10 69.3 127 34.6
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.9e-10 69.3 136 36.8
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.8e-10 68.9 145 36.6
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.8e-10 68.9 142 38.0
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 5.0e-10 68.6 148 33.1
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 5.0e-10 68.6 145 35.9
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 6.5e-10 68.2 145 35.9
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.5e-09 67.0 146 34.2
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 2.5e-09 66.2 139 32.4
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.5e-09 66.2 102 44.1
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 2.5e-09 66.2 145 35.2
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 2.5e-09 66.2 145 35.2
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-09 65.9 139 32.4
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-09 65.9 143 33.6
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 3.2e-09 65.9 145 35.9
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 5.5e-09 65.1 150 33.3
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 5.5e-09 65.1 145 35.2
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 9.4e-09 64.3 115 38.3
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 2.1e-08 63.2 140 34.3
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-08 63.2 156 34.0
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.6e-08 62.4 156 33.3
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.0e-08 61.2 130 34.6
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.4e-07 60.5 114 36.0
BraA03t13172Z Brassica rapa HOM05D021100 ORTHO05D021772 1.8e-07 60.1 106 44.3
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 1.8e-07 60.1 133 39.1
C03p48620 Brassica napus HOM05D021100 ORTHO05D021772 6.7e-07 58.2 106 46.2
BolC3t17141H Brassica oleracea HOM05D021100 ORTHO05D021772 1.5e-06 57.0 90 47.8
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.3e-06 55.8 136 36.0
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.3e-06 55.8 77 41.6
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 9.7e-06 54.3 98 39.8


User provided reference genes

Program Settings