Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 9.9e-71 270.4 178 100.0
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.5e-58 229.2 169 84.0
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.3e-54 216.9 190 71.6
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.6e-50 200.7 173 69.4
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.9e-34 149.8 174 52.3
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.8e-33 146.0 175 53.1
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.6e-31 139.4 174 50.0
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 3.4e-31 139.0 172 48.8
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.3e-30 137.1 174 49.4
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.1e-29 134.0 181 47.0
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.9e-29 133.3 177 49.7
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 3.2e-29 132.5 126 56.3
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 9.3e-29 131.0 174 47.7
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.2e-28 130.6 127 55.9
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.6e-28 130.2 124 53.2
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.1e-28 129.8 175 48.0
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 2.1e-28 129.8 175 48.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 4.6e-28 128.6 123 56.1
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 4.6e-28 128.6 124 53.2
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 4.6e-28 128.6 124 53.2
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 6.1e-28 128.3 127 55.1
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 7.9e-28 127.9 172 51.7
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 7.9e-28 127.9 172 46.5
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.0e-27 127.5 125 51.2
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.3e-27 127.1 175 48.0
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.8e-27 126.7 177 45.2
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.0e-27 125.9 123 54.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.0e-27 125.9 176 45.5
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 3.9e-27 125.6 181 49.7
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 8.8e-27 124.4 125 55.2
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.1e-26 124.0 183 43.2
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.5e-26 123.6 123 54.5
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.5e-26 123.6 180 45.6
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.5e-26 123.6 180 43.3
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.3e-26 122.1 126 50.8
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 5.7e-26 121.7 130 54.6
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 7.4e-26 121.3 172 44.2
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.8e-25 119.4 171 47.4
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.8e-25 119.4 122 54.1
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.8e-25 119.4 180 43.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.8e-25 119.4 174 44.8
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 3.7e-25 119.0 175 56.6
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 3.7e-25 119.0 176 42.0
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 4.8e-25 118.6 180 47.2
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.8e-25 118.6 124 53.2
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 4.8e-25 118.6 169 43.2
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.3e-25 118.2 174 43.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 8.2e-25 117.9 124 50.0
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.1e-24 117.5 136 50.0
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.1e-24 117.5 172 43.6
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.8e-24 116.7 179 44.7
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 3.1e-24 115.9 171 42.7
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 4.1e-24 115.5 124 52.4
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.1e-24 115.5 124 52.4
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 6.9e-24 114.8 171 45.6
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 6.9e-24 114.8 127 51.2
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 6.9e-24 114.8 124 52.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.2e-23 114.0 180 45.0
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.5e-23 113.6 122 52.5
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-23 113.2 117 52.1
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-23 113.2 117 52.1
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.6e-23 112.8 171 44.4
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.6e-23 112.8 123 51.2
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 3.4e-23 112.5 123 50.4
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 4.5e-23 112.1 127 49.6
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 5.9e-23 111.7 117 52.1
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.9e-23 111.7 129 48.1
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.0e-22 110.9 180 46.7
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.7e-22 110.2 117 47.9
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.7e-22 110.2 117 47.9
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.2e-22 109.8 173 46.8
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.9e-22 109.4 173 46.8
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.8e-22 109.0 129 47.3
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 5.0e-22 108.6 175 50.3
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 8.5e-22 107.8 126 44.4
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 8.5e-22 107.8 124 49.2
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 8.5e-22 107.8 174 54.6
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.5e-22 107.8 124 46.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 8.5e-22 107.8 126 50.0
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-21 107.5 180 43.3
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 2.7e-20 102.8 182 39.6
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 4.7e-20 102.1 184 50.0
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.0e-19 100.9 121 48.8
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.0e-19 100.9 180 41.7
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 1.8e-19 100.1 187 48.7
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 2.3e-19 99.8 182 49.5
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 3.0e-19 99.4 181 42.5
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 3.9e-19 99.0 189 52.4
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 3.9e-19 99.0 181 42.5
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 5.1e-19 98.6 121 43.8
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 5.1e-19 98.6 179 37.4
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 5.1e-19 98.6 121 43.8
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.8e-19 97.8 172 41.3
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.5e-18 97.1 126 46.0
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-18 96.7 174 41.4
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-18 96.7 113 49.6
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 3.3e-18 95.9 185 41.6
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.3e-18 95.9 120 45.8
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.3e-18 95.9 123 43.9
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.3e-18 95.9 119 45.4
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.4e-18 94.7 117 47.0
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 7.4e-18 94.7 121 44.6
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.3e-17 94.0 179 38.5
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-17 93.6 117 45.3
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-17 93.2 114 48.2
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 3.7e-17 92.4 185 40.5
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 4.8e-17 92.0 122 45.9
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 6.3e-17 91.7 116 44.0
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 6.3e-17 91.7 118 44.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 6.3e-17 91.7 108 51.9
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 6.3e-17 91.7 108 51.9
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 6.3e-17 91.7 120 46.7
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 8.2e-17 91.3 108 51.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 8.2e-17 91.3 108 51.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 1.4e-16 90.5 112 45.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.8e-16 90.1 116 44.0
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-16 89.7 108 50.9
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 3.1e-16 89.4 106 46.2
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 4.1e-16 89.0 181 40.9
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 4.1e-16 89.0 122 40.2
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 6.9e-16 88.2 127 44.9
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 9.1e-16 87.8 116 43.1
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.0e-15 86.7 125 42.4
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.6e-15 86.3 130 40.0
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 5.9e-15 85.1 118 44.9
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 5.9e-15 85.1 108 50.0
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 5.9e-15 85.1 122 43.4
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 7.7e-15 84.7 177 39.5
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.7e-15 84.7 107 49.5
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 7.7e-15 84.7 108 50.0
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.0e-14 84.3 125 46.4
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 1.3e-14 84.0 178 40.4
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-14 83.2 114 43.9
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-14 83.2 101 50.5
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-14 83.2 108 50.0
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.9e-14 82.8 173 38.7
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 3.8e-14 82.4 121 43.0
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 5.0e-14 82.0 185 39.5
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 5.0e-14 82.0 185 39.5
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 5.0e-14 82.0 186 38.7
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 8.5e-14 81.3 125 43.2
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.1e-13 80.9 114 43.9
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-13 80.5 108 49.1
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-13 80.5 108 49.1
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-13 80.1 125 38.4
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.5e-13 79.7 108 49.1
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 9.4e-13 77.8 123 39.8
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-12 77.4 112 43.8
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 4.7e-12 75.5 110 49.1
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 2.3e-11 73.2 115 37.4
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 3.0e-11 72.8 104 45.2
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 3.9e-11 72.4 124 39.5
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.9e-11 72.4 154 38.3
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.7e-11 71.6 120 40.8
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.7e-11 71.6 120 40.8
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 8.8e-11 71.2 116 40.5
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.5e-10 70.5 93 46.2
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.5e-10 70.5 93 46.2
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.5e-10 70.5 135 37.8
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.5e-10 70.5 120 43.3
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 2.0e-10 70.1 115 40.0
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.0e-10 70.1 113 41.6
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 2.6e-10 69.7 131 40.5
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.6e-10 69.7 120 38.3
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 3.3e-10 69.3 119 37.8
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.7e-10 67.8 77 48.1
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.7e-09 67.0 152 35.5
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.8e-09 66.2 85 45.9
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.8e-09 66.2 119 38.7
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.2e-09 64.7 98 42.9
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.1e-08 64.3 114 42.1
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 1.4e-08 63.9 146 37.0
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 9.1e-08 61.2 86 44.2
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-07 60.1 116 39.7
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.6e-07 59.7 132 35.6
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.7e-07 58.2 109 37.6
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.3e-06 57.4 99 39.4
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.2e-06 56.6 117 39.3
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 2.2e-06 56.6 125 36.0
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 5.0e-06 55.5 120 35.0
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 5.0e-06 55.5 120 35.0
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 5.0e-06 55.5 120 35.0
BcaC03g14931 Brassica carinata HOM05D008071 ORTHO05D009954 6.5e-06 55.1 120 35.0
BolC2t08535H Brassica oleracea HOM05D008071 ORTHO05D009954 6.5e-06 55.1 120 35.0
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.5e-06 54.7 128 35.9


User provided reference genes

Program Settings