Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 5.0e-108 394.4 197 100.0
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 2.6e-96 355.5 197 89.8
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 7.5e-96 354.0 197 88.8
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.6e-93 344.7 197 85.3
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 4.6e-93 344.7 197 86.8
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 7.8e-93 344.0 197 86.3
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 5.0e-92 341.3 198 84.8
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 2.5e-91 339.0 198 84.8
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 3.6e-90 335.1 206 82.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.3e-89 332.4 208 80.8
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 5.6e-83 311.2 170 91.2
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 5.6e-83 311.2 194 78.9
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 4.1e-78 295.0 197 72.6
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 5.4e-78 294.7 197 73.1
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 3.5e-77 292.0 197 72.6
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 7.8e-77 290.8 196 71.4
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 7.8e-77 290.8 197 72.1
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.0e-76 290.4 197 72.6
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 1.7e-76 289.7 197 71.6
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.0e-76 288.9 197 71.6
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 5.1e-76 288.1 191 72.8
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 6.6e-76 287.7 197 72.1
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.1e-75 287.0 197 71.1
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.5e-75 286.6 196 70.4
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.5e-75 286.6 197 71.6
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.9e-75 286.2 197 71.6
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 4.3e-75 285.0 192 71.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 4.3e-75 285.0 197 71.6
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 7.3e-75 284.3 197 69.5
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.6e-74 283.1 193 69.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 2.1e-74 282.7 192 71.9
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 2.8e-74 282.3 193 69.9
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 6.2e-74 281.2 197 69.5
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 8.1e-74 280.8 193 70.5
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 8.1e-74 280.8 197 71.6
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 4.0e-73 278.5 197 68.0
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 6.8e-73 277.7 193 69.9
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 8.9e-73 277.3 190 71.1
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 8.9e-73 277.3 191 71.2
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 8.9e-73 277.3 197 69.0
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.2e-72 276.9 193 68.9
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.5e-72 276.6 196 68.9
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.5e-72 276.6 193 69.9
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.5e-72 276.6 193 68.9
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.5e-72 276.6 198 69.2
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.0e-72 276.2 193 69.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 3.4e-72 275.4 176 79.5
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.4e-72 275.0 194 68.6
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 7.6e-72 274.2 193 69.4
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 7.6e-72 274.2 192 69.8
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 9.9e-72 273.9 191 70.7
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 9.9e-72 273.9 193 68.4
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.2e-71 272.7 188 71.3
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 4.9e-71 271.6 185 72.4
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 4.9e-71 271.6 193 69.4
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 6.4e-71 271.2 188 70.2
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 6.4e-71 271.2 191 69.1
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.9e-70 269.6 190 71.1
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 3.2e-70 268.9 196 69.4
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 4.2e-70 268.5 191 69.1
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 7.1e-70 267.7 188 70.2
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 9.3e-70 267.3 191 68.6
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 9.3e-70 267.3 197 64.5
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 3.5e-69 265.4 187 70.6
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 4.6e-69 265.0 191 67.0
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 7.8e-69 264.2 191 69.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 7.8e-69 264.2 197 66.0
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 3.0e-68 262.3 191 68.6
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 6.6e-68 261.2 171 74.3
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 8.7e-68 260.8 189 68.3
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.7e-68 260.8 190 68.9
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.1e-67 260.4 192 68.8
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 2.5e-67 259.2 192 65.1
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 5.6e-67 258.1 171 74.3
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 5.6e-67 258.1 195 66.7
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.3e-66 256.9 171 73.1
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 2.1e-66 256.1 191 66.5
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 2.1e-66 256.1 185 68.6
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 1.8e-65 253.1 186 68.3
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 2.4e-65 252.7 171 71.9
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 3.1e-65 252.3 189 66.7
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 3.1e-65 252.3 179 69.3
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 4.0e-65 251.9 168 72.0
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 9.0e-65 250.8 191 65.4
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.0e-64 249.6 179 68.2
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 2.6e-64 249.2 193 61.1
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 3.4e-64 248.8 188 63.3
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 5.8e-64 248.1 191 64.4
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.3e-63 246.9 190 66.3
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 6.4e-63 244.6 177 69.5
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 6.4e-63 244.6 188 62.8
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 8.4e-63 244.2 170 71.2
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 8.4e-63 244.2 168 71.4
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 8.4e-63 244.2 168 71.4
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.1e-62 243.8 168 70.8
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.1e-62 243.8 171 69.6
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.1e-62 243.8 168 70.2
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.4e-62 243.4 193 60.1
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 2.4e-62 242.7 197 61.9
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 3.2e-62 242.3 193 62.7
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 4.2e-62 241.9 187 66.8
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.2e-61 240.4 195 57.4
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.6e-61 240.0 170 68.8
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.7e-60 236.5 194 63.9
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 5.1e-60 235.0 168 68.5
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 8.7e-60 234.2 175 65.1
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 9.6e-59 230.7 193 60.1
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 9.6e-59 230.7 171 66.1
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.6e-58 229.9 171 65.5
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 8.1e-58 227.6 165 65.5
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.1e-57 227.3 192 56.8
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.4e-57 226.1 178 64.6
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 2.6e-56 222.6 171 65.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 2.2e-55 219.5 188 61.2
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 4.9e-55 218.4 190 58.4
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.4e-54 216.9 190 59.5
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 4.2e-54 215.3 193 58.0
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 4.6e-53 211.8 189 54.0
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.0e-52 210.7 143 72.7
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 3.9e-52 208.8 143 72.7
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.7e-52 208.0 171 60.2
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.6e-50 203.4 193 54.4
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.7e-50 202.2 192 56.8
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 2.0e-48 196.4 134 69.4
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.4e-46 190.3 190 51.1
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.3e-44 183.7 119 76.5
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 2.8e-42 176.0 134 61.2
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.4e-41 173.7 119 70.6
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 5.3e-41 171.8 112 75.0
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 9.0e-41 171.0 188 51.6
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 3.5e-37 159.1 185 45.4
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 5.7e-35 151.8 171 50.3
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.7e-35 151.0 171 49.7
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 2.1e-21 106.7 136 47.1
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 3.8e-15 85.9 58 65.5
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 4.7e-13 79.0 61 65.6
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 2.3e-12 76.6 52 63.5
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 3.9e-12 75.9 174 35.1
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 2.4e-09 66.6 178 32.0
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 5.3e-09 65.5 171 33.3
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.0e-08 63.5 173 28.9
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 7.7e-08 61.6 154 29.2
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 7.7e-08 61.6 175 30.3
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.0e-07 61.2 184 25.0
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.0e-07 61.2 173 30.6
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.7e-07 60.5 183 28.4
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 2.9e-07 59.7 189 28.6
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 5.0e-07 58.9 56 50.0
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 6.5e-07 58.5 172 29.1
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 6.5e-07 58.5 178 28.7
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.1e-06 57.8 173 30.6
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.9e-06 57.0 169 26.6
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 4.2e-06 55.8 174 31.0


User provided reference genes

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