Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 3.0e-25 117.9 65 100.0
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 3.0e-25 117.9 65 100.0
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 8.7e-25 116.3 65 98.5
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 8.7e-25 116.3 65 98.5
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 2.1e-23 111.7 65 95.4
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 2.1e-23 111.7 65 95.4
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 2.1e-23 111.7 65 93.8
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 3.7e-23 110.9 65 93.8
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 6.9e-22 106.7 65 90.8
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 2.6e-21 104.8 63 92.1
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 89.2
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 89.2
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 89.2
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 89.2
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 89.2
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 3.4e-21 104.4 65 89.2
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 4.5e-21 104.0 65 89.2
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 4.5e-21 104.0 65 89.2
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 7.6e-21 103.2 65 87.7
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 1.3e-20 102.4 65 87.7
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 1.3e-20 102.4 65 87.7
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 2.2e-20 101.7 65 86.2
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 3.8e-20 100.9 74 81.1
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 3.8e-20 100.9 65 86.2
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 4.9e-20 100.5 65 87.7
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 6.5e-20 100.1 65 86.2
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 8.4e-20 99.8 65 86.2
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 8.4e-20 99.8 65 84.6
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.1e-19 99.4 65 86.2
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 1.1e-19 99.4 65 86.2
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.4e-19 99.0 65 86.2
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.4e-19 99.0 65 86.2
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 1.4e-19 99.0 65 86.2
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 2.5e-19 98.2 65 86.2
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 4.2e-19 97.4 62 87.1
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 4.2e-19 97.4 62 87.1
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 4.2e-19 97.4 62 87.1
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 4.2e-19 97.4 62 87.1
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 4.2e-19 97.4 62 87.1
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 4.2e-19 97.4 65 83.1
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 5.5e-19 97.1 65 84.6
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 5.5e-19 97.1 65 84.6
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 7.1e-19 96.7 65 83.1
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 7.1e-19 96.7 65 83.1
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 7.1e-19 96.7 65 81.5
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 7.1e-19 96.7 65 84.6
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 9.3e-19 96.3 60 86.7
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 9.3e-19 96.3 60 86.7
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 1.2e-18 95.9 65 84.6
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.2e-18 95.9 65 83.1
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.2e-18 95.9 65 83.1
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.2e-18 95.9 65 83.1
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 1.6e-18 95.5 65 81.5
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 1.6e-18 95.5 62 85.5
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 1.6e-18 95.5 65 83.1
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 1.6e-18 95.5 65 83.1
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 2.7e-18 94.7 65 81.5
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 2.7e-18 94.7 63 84.1
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 3.5e-18 94.4 71 76.1
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 3.5e-18 94.4 65 81.5
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 4.6e-18 94.0 65 81.5
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 7.9e-18 93.2 65 80.0
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 1.0e-17 92.8 65 80.0
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 1.0e-17 92.8 75 74.7
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 1.0e-17 92.8 64 79.7
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.3e-17 92.4 65 80.0
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.3e-17 92.4 65 81.5
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 1.3e-17 92.4 65 80.0
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 1.8e-17 92.0 65 78.5
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 1.8e-17 92.0 65 81.5
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 3.0e-17 91.3 65 78.5
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 3.9e-17 90.9 65 80.0
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 5.1e-17 90.5 65 84.6
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 6.7e-17 90.1 74 73.0
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 8.7e-17 89.7 62 79.0
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 1.1e-16 89.4 65 75.4
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.1e-16 89.4 65 76.9
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 1.1e-16 89.4 65 83.1
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 81.5
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 81.5
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 76.9
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 81.5
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 4.3e-16 87.4 60 78.3
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 4.3e-16 87.4 93 61.3
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 5.7e-16 87.0 65 78.5
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 5.7e-16 87.0 65 78.5
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 5.7e-16 87.0 65 75.4
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 7.4e-16 86.7 65 81.5
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 7.4e-16 86.7 66 80.3
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 7.4e-16 86.7 66 80.3
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 9.6e-16 86.3 65 78.5
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 1.3e-15 85.9 60 80.0
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 1.3e-15 85.9 62 75.8
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 73.8
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 73.8
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 1.6e-15 85.5 59 79.7
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 76.9
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 73.8
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 78.5
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 3.7e-15 84.3 61 77.0
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 3.7e-15 84.3 64 73.4
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 3.7e-15 84.3 65 73.8
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 4.8e-15 84.0 64 76.6
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 6.3e-15 83.6 64 71.9
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 6.3e-15 83.6 63 77.8
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.3e-14 80.5 54 79.6
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 1.2e-13 79.3 54 79.6
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 1.5e-13 79.0 90 57.8
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 2.0e-13 78.6 58 74.1
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 1.7e-12 75.5 61 68.9
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 2.9e-12 74.7 65 67.7
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 2.9e-12 74.7 65 67.7
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 8.4e-12 73.2 60 70.0
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 1.9e-11 72.0 60 73.3
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 4.2e-11 70.9 55 78.2
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 1.2e-10 69.3 60 66.7
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 2.1e-10 68.6 63 63.5
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 6.1e-10 67.0 42 88.1
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 2.3e-09 65.1 54 74.1
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.9e-08 62.0 65 63.1
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 7.4e-08 60.1 60 65.0
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 9.7e-08 59.7 40 82.5
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.6e-07 58.9 65 61.5
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 4.8e-07 57.4 40 77.5


User provided reference genes

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