Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.0e-226 789.6 719 100.0
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 7.5e-194 681.4 727 91.2
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 4.0e-179 632.5 723 88.0
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 8.9e-171 604.7 725 74.8
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 3.8e-153 546.2 728 65.5
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 5.1e-134 482.6 725 66.3
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.5e-133 481.1 724 72.9
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 3.8e-121 439.9 722 67.7
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 4.5e-114 416.4 699 67.5
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 1.4e-110 404.8 697 66.6
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 9.1e-107 392.1 701 62.5
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 1.0e-105 388.7 699 63.7
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 2.5e-104 384.0 702 68.5
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.7e-100 371.3 695 66.9
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.2e-98 365.2 698 63.2
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-97 361.7 698 62.9
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.3e-97 361.7 698 62.9
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 4.4e-93 346.7 698 67.0
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-92 345.1 704 42.3
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.9e-72 278.1 727 54.6
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 2.1e-71 274.6 684 45.8
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 8.0e-71 272.7 687 41.5
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 4.9e-60 236.9 523 33.1
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.9e-59 235.0 727 44.3
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 6.0e-58 229.9 534 50.7
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 8.6e-57 226.1 531 41.4
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.8e-54 218.4 550 47.6
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 4.0e-54 217.2 534 45.1
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.2e-53 215.7 540 40.2
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.0e-53 214.9 528 44.5
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.4e-53 213.8 544 39.7
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 6.4e-52 209.9 576 48.4
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.2e-50 205.7 498 52.8
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.6e-50 205.3 584 43.2
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 4.6e-50 203.8 536 40.5
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 4.6e-50 203.8 685 33.1
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.8e-50 203.0 566 32.2
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.0e-49 202.6 568 32.6
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.0e-49 201.1 564 33.3
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 6.6e-49 199.9 587 47.2
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 4.3e-48 197.2 523 41.7
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.2e-47 195.7 533 35.6
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.6e-47 195.3 690 38.1
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.8e-46 191.8 542 48.0
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 4.4e-45 187.2 536 31.7
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 2.2e-44 184.9 736 53.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.1e-43 182.6 530 50.8
BolC1t04796H Brassica oleracea HOM05D004642 ORTHO05D005466 2.1e-42 178.3 277 64.3
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.1e-40 172.6 702 36.8
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 4.3e-40 170.6 533 37.1
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 5.6e-40 170.2 733 39.3
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 7.3e-40 169.9 527 45.7
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 9.6e-40 169.5 530 45.1
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 6.2e-39 166.8 635 39.7
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.4e-38 165.6 527 44.8
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.9e-38 163.3 492 40.7
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 3.4e-37 161.0 721 33.4
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 4.5e-37 160.6 732 48.1
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 5.8e-37 160.2 530 34.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 7.6e-37 159.8 538 45.5
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 1.7e-36 158.7 387 39.5
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 2.2e-36 158.3 542 47.0
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.8e-36 157.5 533 43.3
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.9e-35 155.2 511 36.6
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.9e-35 155.2 528 43.4
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.4e-35 154.8 507 46.9
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 5.4e-35 153.7 729 42.4
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 7.1e-35 153.3 202 42.1
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 9.3e-35 152.9 524 39.3
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 2.1e-34 151.8 349 52.7
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 2.1e-34 151.8 349 52.7
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 3.5e-34 151.0 534 36.9
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.8e-33 148.7 525 42.5
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.8e-33 148.7 650 37.1
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.8e-33 148.7 662 41.2
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 3.9e-33 147.5 257 47.5
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 5.1e-33 147.1 517 38.1
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.5e-32 145.6 568 47.7
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.9e-32 145.2 721 39.5
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 3.3e-32 144.4 721 38.6
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 5.6e-32 143.7 430 44.0
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 7.4e-32 143.3 531 49.9
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 7.4e-32 143.3 475 45.9
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.6e-31 142.1 683 28.6
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.6e-31 141.0 191 47.1
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 3.6e-31 141.0 461 29.3
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.1e-30 139.4 208 46.2
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.8e-30 138.7 615 35.1
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 4.0e-30 137.5 649 39.3
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 4.0e-30 137.5 373 47.7
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 9.0e-30 136.3 214 50.9
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 9.0e-30 136.3 568 39.8
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.2e-29 136.0 477 33.5
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.5e-29 135.6 518 29.0
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 3.4e-29 134.4 252 42.5
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 4.5e-29 134.0 527 42.3
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 7.6e-29 133.3 706 39.4
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 7.6e-29 133.3 195 45.1
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 9.9e-29 132.9 481 37.2
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 6.4e-28 130.2 482 34.4
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.1e-27 129.4 509 42.0
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 4.2e-27 127.5 512 43.9
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 4.2e-27 127.5 512 43.9
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 4.2e-27 127.5 541 32.9
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 2.1e-26 125.2 478 41.8
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 4.6e-26 124.0 516 38.8
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 6.0e-26 123.6 518 31.3
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 7.9e-26 123.2 531 42.2
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 3.3e-24 117.9 451 35.0
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.3e-23 115.9 166 46.4
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.8e-23 114.8 142 51.4
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.8e-22 112.1 447 38.9
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.2e-21 109.4 382 41.1
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 5.8e-21 107.1 434 36.6
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 2.9e-20 104.8 463 51.0
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 4.9e-20 104.0 519 32.6
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 6.5e-20 103.6 58 100.0
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 8.4e-20 103.2 210 39.0
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 1.9e-19 102.1 679 31.7
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.9e-19 102.1 528 31.6
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 2.5e-19 101.7 493 46.5
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 1.2e-18 99.4 495 39.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 8.7e-17 93.2 480 36.7
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.5e-16 92.4 425 30.1
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 1.5e-16 92.4 566 33.7
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 4.3e-16 90.9 205 35.1
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 7.4e-16 90.1 104 49.0
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 9.6e-16 89.7 201 35.8
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 2.1e-15 88.6 524 47.5
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 6.3e-15 87.0 402 47.5
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 6.3e-15 87.0 411 34.5
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 8.2e-15 86.7 475 34.7
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 2.4e-14 85.1 549 34.4
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 6.9e-14 83.6 59 79.7
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 9.0e-14 83.2 113 46.9
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 5.9e-13 80.5 507 32.1
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 2.2e-12 78.6 509 45.0
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 5.0e-12 77.4 205 31.2
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 1.1e-11 76.3 88 52.3
BolC1t04794H Brassica oleracea HOM05D015723 ORTHO05D003275 3.2e-11 74.7 57 64.9
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 9.3e-11 73.2 159 30.8
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.1e-10 72.0 451 20.0
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.3e-09 68.6 426 20.0
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 5.1e-09 67.4 442 19.2
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 5.1e-09 67.4 417 29.5
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 6.7e-09 67.0 335 23.0
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.2e-07 62.0 91 40.7
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 6.3e-07 60.5 176 25.6
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-06 59.7 84 40.5
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.8e-06 58.9 121 33.9


User provided reference genes

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