Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.1e-167 593.2 302 100.0
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 4.9e-163 577.8 302 96.4
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 6.9e-141 504.2 299 86.3
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.0e-137 491.1 299 84.6
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 4.3e-135 485.0 288 87.2
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.8e-134 482.3 301 85.7
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-133 479.9 299 83.9
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 7.6e-132 474.2 299 83.3
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 7.6e-132 474.2 299 83.3
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.8e-131 471.9 299 82.9
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-129 466.8 299 82.3
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 3.9e-128 461.8 299 81.6
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 3.9e-128 461.8 300 81.3
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 3.9e-128 461.8 299 81.6
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 3.9e-128 461.8 300 81.3
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-127 460.3 299 81.3
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 5.5e-122 441.4 281 81.9
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.6e-121 439.9 303 75.9
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.6e-121 438.3 303 77.6
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.0e-120 435.6 293 78.8
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.5e-116 423.3 294 78.2
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-116 422.2 294 77.6
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-116 422.2 294 78.2
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 3.4e-116 422.2 294 78.2
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 7.7e-116 421.0 301 73.4
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.6e-113 413.3 294 76.5
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.7e-113 412.5 294 76.5
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 2.2e-110 402.9 310 71.9
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 9.7e-103 377.5 286 72.0
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 4.8e-102 375.2 267 71.9
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 5.0e-99 365.2 254 73.6
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.1e-98 364.0 227 78.4
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.1e-98 364.0 256 73.4
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.2e-98 362.5 290 67.6
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.2e-98 362.1 245 75.9
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 4.2e-98 362.1 215 80.9
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 7.2e-98 361.3 220 80.9
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.1e-97 359.8 214 82.2
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.1e-97 359.8 216 81.9
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.1e-97 359.8 234 77.4
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.6e-97 359.0 216 80.6
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 8.0e-97 357.8 216 81.5
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.0e-97 357.8 216 81.5
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.8e-96 356.7 243 73.3
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 2.3e-96 356.3 272 69.5
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 4.0e-96 355.5 221 80.1
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 5.2e-96 355.1 291 64.3
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.2e-95 354.0 224 78.6
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.5e-95 353.6 232 75.9
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.0e-95 353.2 262 70.2
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 4.4e-95 352.1 210 81.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 5.7e-95 351.7 267 67.8
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 7.5e-95 351.3 228 76.8
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.3e-94 350.5 236 74.2
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.3e-94 350.5 238 75.6
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 3.7e-94 349.0 216 79.2
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.4e-93 347.1 236 73.3
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.8e-93 346.7 248 69.8
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.4e-93 346.3 240 73.8
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 5.4e-93 345.1 236 75.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.0e-93 344.7 240 73.8
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.5e-92 342.4 212 79.7
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 4.5e-92 342.0 283 65.0
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 7.7e-92 341.3 255 69.4
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.7e-91 340.1 252 69.4
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.7e-91 340.1 218 78.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.7e-91 340.1 218 78.9
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.9e-91 339.3 264 67.8
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 3.8e-91 339.0 286 63.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 3.8e-91 339.0 223 74.0
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 3.8e-91 339.0 223 74.0
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.8e-91 339.0 234 74.4
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 5.0e-91 338.6 223 74.4
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 5.0e-91 338.6 270 66.7
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 5.0e-91 338.6 216 78.2
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 6.5e-91 338.2 245 70.6
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 6.5e-91 338.2 275 68.4
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 8.5e-91 337.8 223 74.0
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 8.5e-91 337.8 223 74.0
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 8.5e-91 337.8 223 74.0
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 8.5e-91 337.8 272 64.7
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.1e-90 337.4 242 70.2
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.9e-90 336.7 283 62.5
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.9e-90 336.7 234 73.9
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 3.2e-90 335.9 290 62.1
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 3.2e-90 335.9 276 65.6
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 4.2e-90 335.5 219 75.3
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 5.5e-90 335.1 264 66.3
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 5.5e-90 335.1 241 71.8
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.1e-89 333.2 271 65.7
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.6e-89 332.4 256 70.7
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 4.7e-89 332.0 260 65.4
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 4.7e-89 332.0 215 75.3
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.7e-89 332.0 230 73.5
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.8e-88 330.1 246 69.9
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 8.8e-88 327.8 225 73.8
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 8.8e-88 327.8 246 69.5
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.2e-87 327.4 219 74.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.5e-87 327.0 225 72.9
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.4e-87 325.5 241 70.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.4e-87 325.5 254 66.5
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 5.7e-87 325.1 254 66.5
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 7.5e-87 324.7 260 65.8
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.3e-86 323.9 210 76.2
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.2e-86 323.2 271 63.1
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.2e-86 323.2 214 73.4
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.8e-86 322.8 271 63.5
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.7e-86 322.4 221 74.2
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.1e-85 320.9 222 72.5
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.1e-85 320.9 238 68.9
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-85 320.9 234 71.4
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.4e-85 320.5 215 74.4
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 3.1e-85 319.3 274 64.2
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.6e-84 317.0 207 75.4
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.6e-84 317.0 209 75.1
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.0e-84 316.6 210 72.9
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.7e-84 316.2 222 73.9
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 8.6e-83 311.2 228 70.2
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.5e-82 310.5 247 65.2
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.5e-82 309.7 206 73.8
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.2e-82 308.9 217 72.4
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 5.6e-82 308.5 231 67.1
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 5.6e-82 308.5 264 63.3
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 7.2e-82 308.1 215 72.6
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.6e-81 305.8 217 71.9
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.6e-81 305.8 219 70.8
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 4.7e-81 305.4 248 63.7
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.0e-80 304.3 264 61.7
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.4e-80 303.9 233 67.4
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 3.0e-80 302.8 233 64.8
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 5.2e-80 302.0 214 70.6
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 2.9e-78 296.2 211 70.1
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 3.7e-78 295.8 171 83.6
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 8.3e-78 294.7 249 61.4
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 8.3e-78 294.7 199 73.9
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.8e-77 293.5 222 67.6
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.7e-76 289.7 226 65.9
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 3.5e-76 289.3 278 56.8
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.5e-74 283.1 244 63.1
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.3e-74 282.7 177 79.1
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.4e-72 277.3 223 65.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 5.2e-72 275.4 179 77.7
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 8.1e-65 251.5 215 60.9
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-63 247.7 226 61.1
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 4.9e-62 242.3 206 59.2
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 6.4e-62 241.9 266 51.5
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.2e-60 237.7 220 59.5
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.6e-60 235.7 269 53.2
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.5e-58 230.7 143 80.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.3e-58 229.2 143 79.7
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-55 221.1 210 55.7
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 1.3e-54 217.6 133 80.5
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.6e-49 199.5 215 47.9
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 5.8e-47 192.2 210 50.0
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.1e-40 171.4 169 50.9
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.4e-39 166.4 184 51.6
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 9.3e-37 158.3 173 53.8
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.4e-26 122.1 76 82.9
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 2.8e-25 120.2 80 68.8
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 9.6e-18 95.1 65 66.2
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.4e-13 81.3 89 47.2
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 3.0e-11 73.6 65 58.5
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.1e-10 71.6 75 53.3
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.5e-10 70.5 76 57.9
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 7.4e-10 68.9 44 75.0
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 9.7e-10 68.6 97 42.3
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.5e-07 61.2 40 72.5


User provided reference genes

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