Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 0.0e+00 1318.1 728 100.0
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 0.0e+00 1255.4 729 95.5
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 0.0e+00 1170.6 730 87.9
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 0.0e+00 1159.4 736 83.3
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 0.0e+00 1096.6 729 82.4
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 0.0e+00 1090.1 736 81.1
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 0.0e+00 1075.5 732 82.0
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 4.5e-311 1070.8 730 81.6
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 9.6e-306 1053.1 731 78.9
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-303 1046.2 732 78.6
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.2e-302 1042.0 731 77.8
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 6.4e-302 1040.4 733 79.8
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 3.7e-297 1024.6 730 79.0
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-293 1013.1 731 78.5
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.9e-293 1012.3 730 78.2
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 5.5e-293 1010.7 736 77.7
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.3e-291 1005.4 731 78.7
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 2.8e-289 998.4 730 77.4
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.5e-277 958.7 739 72.1
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 8.8e-259 897.1 740 68.4
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.1e-229 800.4 750 58.8
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.1e-216 757.3 751 55.7
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 3.5e-215 752.3 749 57.1
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 7.8e-215 751.1 755 56.6
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 6.6e-214 748.0 748 57.1
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.6e-212 743.4 789 53.6
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 2.1e-212 743.0 744 54.8
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 3.6e-212 742.3 732 56.1
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 6.2e-212 741.5 748 55.9
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 4.0e-211 738.8 789 53.4
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 8.9e-211 737.6 745 56.4
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 2.2e-209 733.0 744 54.8
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.1e-208 730.7 793 52.6
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.2e-208 729.2 743 53.6
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.4e-208 728.4 746 54.3
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.6e-207 726.9 753 54.8
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.6e-207 725.3 744 54.3
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 7.8e-207 724.5 744 55.2
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.7e-206 723.4 721 56.2
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-205 720.7 715 55.0
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.5e-205 720.3 748 54.8
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 4.7e-204 715.3 741 53.8
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.4e-203 713.0 720 57.4
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 3.4e-202 709.1 741 53.4
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 4.4e-202 708.8 799 51.7
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.7e-201 706.8 765 53.1
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 8.4e-201 704.5 744 53.5
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 5.4e-200 701.8 770 52.3
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 7.1e-200 701.4 745 54.6
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.3e-198 696.4 749 53.4
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 8.7e-198 694.5 756 54.1
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.3e-197 692.2 751 53.3
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 6.9e-195 684.9 743 54.8
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 2.6e-194 682.9 748 52.3
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 2.7e-191 672.9 794 49.9
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.5e-191 672.5 811 50.2
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 7.9e-191 671.4 752 50.9
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.3e-190 670.6 744 51.6
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 1.8e-190 670.2 750 52.9
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 6.7e-190 668.3 769 51.5
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.5e-189 667.2 739 51.6
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 5.6e-189 665.2 813 49.8
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 5.6e-189 665.2 761 55.1
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 2.8e-188 662.9 604 59.4
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 6.2e-188 661.8 834 49.4
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 8.1e-188 661.4 812 49.8
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.4e-187 659.8 848 47.9
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 6.9e-187 658.3 779 50.7
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 9.0e-187 657.9 786 50.0
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.7e-185 653.7 819 49.2
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 3.8e-185 652.5 785 51.0
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 6.4e-185 651.7 825 47.4
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.1e-184 651.0 848 47.5
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.1e-184 651.0 762 51.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.1e-184 651.0 819 49.1
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.9e-184 650.2 741 52.2
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 5.5e-184 648.7 751 50.1
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 7.1e-184 648.3 818 47.8
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.2e-183 647.5 800 49.4
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.8e-182 643.7 807 48.1
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.5e-181 640.6 718 52.2
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.9e-181 640.2 773 49.7
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 5.6e-181 638.6 795 49.2
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 7.4e-181 638.3 714 52.4
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 2.1e-180 636.7 751 49.1
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 8.2e-180 634.8 765 50.2
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.1e-179 632.9 761 49.5
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 9.0e-179 631.3 724 52.1
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.6e-178 629.8 751 49.1
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.4e-178 629.4 711 50.6
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.7e-177 627.1 739 49.1
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 2.2e-177 626.7 751 48.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 4.2e-176 622.5 744 48.5
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-175 620.9 605 55.5
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.1e-175 620.2 831 46.9
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.8e-174 617.1 774 49.2
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.9e-173 613.6 598 54.8
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 7.4e-173 611.7 696 52.2
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 5.9e-170 602.1 600 56.2
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 7.6e-170 601.7 704 51.3
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 3.8e-169 599.4 770 50.1
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 5.5e-168 595.5 817 45.8
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 4.3e-165 585.9 639 55.4
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.3e-164 584.3 745 48.9
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.0e-161 574.7 804 45.0
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.0e-161 572.4 845 43.1
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 4.2e-160 569.3 719 48.0
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.6e-151 539.7 428 64.0
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 3.3e-149 533.1 700 46.1
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 1.3e-145 521.2 631 48.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 5.0e-145 519.2 719 45.6
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.2e-141 508.1 596 50.3
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.4e-139 501.1 835 39.3
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.1e-139 499.6 426 59.4
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 2.9e-137 493.4 859 38.5
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.1e-136 491.5 849 39.2
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.3e-134 483.8 730 41.0
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 8.9e-126 455.3 749 39.7
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 6.8e-118 429.1 481 50.5
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 4.3e-112 409.8 755 38.9
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.5e-104 384.8 647 39.6
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.3e-100 371.7 474 44.9
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 5.1e-89 333.2 533 39.4
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.8e-85 319.7 483 40.6
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.8e-84 317.0 480 39.0
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.3e-83 312.4 705 36.2
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.3e-81 308.5 536 37.7
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.1e-81 306.6 303 52.5
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.4e-77 293.9 465 38.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.9e-76 290.8 479 38.0
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.9e-76 290.8 479 38.0
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.9e-73 280.4 560 35.5
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.8e-71 273.5 567 34.4
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.4e-70 271.2 486 36.6
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.8e-63 246.9 523 42.4
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.6e-58 231.9 607 35.6
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 5.0e-52 210.3 382 39.5
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 3.2e-51 207.6 189 49.2
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 6.7e-41 173.3 91 85.7
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.0e-37 161.8 194 48.5
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.1e-22 111.3 389 32.6
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 6.8e-17 93.6 72 61.1
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.3e-12 79.3 79 45.6
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.3e-12 78.6 54 55.6
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 1.2e-10 72.8 50 64.0
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.0e-10 70.1 74 43.2
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.4e-09 69.3 414 30.4
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 5.2e-09 67.4 65 46.2
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.5e-08 65.9 63 47.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-08 65.9 63 47.6
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 2.0e-08 65.5 50 60.0
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.3e-07 62.8 73 45.2
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 3.1e-06 58.2 92 37.0


User provided reference genes

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