Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 1.2e-25 119.0 60 100.0
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 2.8e-25 117.9 60 98.3
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 1.0e-24 115.9 60 96.7
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 3.1e-24 114.4 58 96.6
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 3.1e-24 114.4 60 95.0
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 6.4e-22 106.7 53 100.0
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 9.2e-21 102.8 60 83.3
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 1.2e-20 102.4 54 88.9
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 1.2e-20 102.4 54 88.9
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 1.2e-20 102.4 54 88.9
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 3.5e-20 100.9 58 86.2
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 3.5e-20 100.9 58 86.2
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 7.8e-20 99.8 60 83.3
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 2.3e-19 98.2 60 80.0
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 5.0e-19 97.1 56 82.1
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 5.0e-19 97.1 56 82.1
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 1.9e-18 95.1 62 77.4
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 3.3e-18 94.4 60 75.0
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 3.3e-18 94.4 60 76.7
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 5.6e-18 93.6 60 75.0
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 2.8e-17 91.3 55 78.2
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 3.6e-17 90.9 57 75.4
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 8.1e-17 89.7 60 75.0
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 8.1e-17 89.7 54 75.9
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 8.1e-17 89.7 57 77.2
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 8.1e-17 89.7 54 77.8
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 2.3e-16 88.2 58 75.9
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 2.3e-16 88.2 60 70.0
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 3.1e-16 87.8 57 70.2
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 3.1e-16 87.8 61 75.4
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 3.1e-16 87.8 53 77.4
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 4.0e-16 87.4 60 71.7
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 4.0e-16 87.4 61 72.1
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 5.2e-16 87.0 60 70.0
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 2.0e-15 85.1 52 76.9
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 2.0e-15 85.1 52 76.9
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 2.6e-15 84.7 58 72.4
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 4.4e-15 84.0 54 72.2
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 7.5e-15 83.2 57 66.7
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 9.8e-15 82.8 58 69.0
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 9.8e-15 82.8 53 71.7
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 1.3e-14 82.4 55 72.7
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 1.3e-14 82.4 60 66.7
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.3e-14 82.4 53 69.8
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.3e-14 82.4 53 69.8
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.3e-14 82.4 53 69.8
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 1.3e-14 82.4 55 72.7
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 2.2e-14 81.6 58 65.5
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 2.2e-14 81.6 61 65.6
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 2.2e-14 81.6 59 69.5
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 2.9e-14 81.3 43 86.0
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 3.7e-14 80.9 57 66.7
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 3.7e-14 80.9 61 62.3
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 6.4e-14 80.1 60 63.3
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 6.4e-14 80.1 60 60.0
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 8.3e-14 79.7 61 63.9
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 1.1e-13 79.3 60 65.0
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.1e-13 79.3 53 71.7
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 1.4e-13 79.0 54 70.4
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 1.9e-13 78.6 60 61.7
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 1.9e-13 78.6 61 62.3
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 2.4e-13 78.2 60 61.7
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 2.4e-13 78.2 54 72.2
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 3.2e-13 77.8 58 67.2
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 5.4e-13 77.0 51 66.7
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 1.2e-12 75.9 51 72.5
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 2.1e-12 75.1 56 66.1
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 2.7e-12 74.7 54 68.5
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 1.0e-11 72.8 53 67.9
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.3e-11 72.4 52 71.2
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.3e-11 72.4 52 71.2
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 3.9e-11 70.9 63 60.3
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 6.6e-11 70.1 55 65.5
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 6.6e-11 70.1 42 73.8
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 1.5e-10 68.9 49 67.3
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 1.6e-09 65.5 52 59.6
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 3.6e-09 64.3 42 66.7
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 1.8e-08 62.0 49 65.3
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 8.9e-08 59.7 47 61.7
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 7.6e-07 56.6 50 62.0
SalBow7G4816 Salvia bowleyana HOM05D007573 ORTHO05D009938 1.7e-06 55.5 91 40.7


User provided reference genes

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