Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27820 Arabidopsis lyrata HOM05D006733 ORTHO05D008406 3.8e-30 134.0 62 100.0
Carub.0003s1505 Capsella rubella HOM05D006733 ORTHO05D008406 1.7e-22 108.6 55 90.9
Thhalv10021853m.g Eutrema salsugineum HOM05D006733 ORTHO05D008406 4.3e-21 104.0 55 85.5
CARHR090380 Cardamine hirsuta HOM05D006733 ORTHO05D008406 3.1e-19 97.8 55 83.6
BcaC05g28981 Brassica carinata HOM05D006733 ORTHO05D008406 1.2e-18 95.9 56 85.7
BolC5t33870H Brassica oleracea HOM05D006733 ORTHO05D008406 1.2e-18 95.9 56 85.7
Aa31LG8G2570 Aethionema arabicum HOM05D006733 ORTHO05D008406 3.4e-18 94.4 55 80.0
A05p34080 Brassica napus HOM05D006733 ORTHO05D008406 5.8e-18 93.6 56 83.9
BraA05t22229Z Brassica rapa HOM05D006733 ORTHO05D008406 5.8e-18 93.6 56 83.9
BcaB06g29562 Brassica carinata HOM05D006733 ORTHO05D008406 1.3e-17 92.4 56 83.9
BolC3t17038H Brassica oleracea HOM05D006733 ORTHO05D008406 6.4e-17 90.1 52 80.8
BcaC01g03880 Brassica carinata HOM05D006733 ORTHO05D008406 1.4e-16 89.0 52 80.8
C03p47630 Brassica napus HOM05D006733 ORTHO05D008406 1.4e-16 89.0 52 80.8
AT3G15353 Arabidopsis thaliana HOM05D006733 ORTHO05D008406 2.3e-14 81.6 61 70.5
PGR031G3292 Punica granatum HOM05D006733 ORTHO05D008406 1.1e-11 72.8 51 62.7
PGR083G2703 Punica granatum HOM05D006733 ORTHO05D008406 2.0e-10 68.6 51 62.7
Nitab4.5_0005764g0010 Nicotiana tabacum HOM05D006733 ORTHO05D008406 4.4e-10 67.4 55 54.5
DCAR_013104 Daucus carota HOM05D006733 ORTHO05D008406 5.8e-10 67.0 51 60.8
Eucgr.F01127 Eucalyptus grandis HOM05D006733 ORTHO05D008406 3.7e-09 64.3 51 56.9
Lj3g0014029 Lotus japonicus HOM05D006733 ORTHO05D008406 3.7e-09 64.3 58 55.2
Hma1.2p1_0885F.1_g232600 Hydrangea macrophylla HOM05D006733 ORTHO05D008406 6.4e-09 63.5 51 54.9
Atru.chr2.2618 Acer truncatum HOM05D006733 ORTHO05D008406 8.3e-09 63.2 51 56.9
Atru.chr2.2701 Acer truncatum HOM05D006733 ORTHO05D008406 8.3e-09 63.2 51 56.9
Atru.chr2.2617 Acer truncatum HOM05D006733 ORTHO05D008406 2.4e-08 61.6 51 56.9
Atru.chr2.2702 Acer truncatum HOM05D006733 ORTHO05D008406 2.4e-08 61.6 51 56.9
Lalb_Chr01g0006561 Lupinus albus HOM05D006733 ORTHO05D008406 3.2e-08 61.2 58 51.7
Nn1g04086 Nelumbo nucifera HOM05D006733 ORTHO05D008406 3.2e-08 61.2 57 49.1
QL08p021800 Quercus lobata HOM05D006733 ORTHO05D008406 3.2e-08 61.2 51 54.9
Nitab4.5_0000332g0130 Nicotiana tabacum HOM05D006733 ORTHO05D008406 7.1e-08 60.1 55 52.7
Oeu024912.1 Olea europaea HOM05D006733 ORTHO05D008406 1.2e-07 59.3 56 50.0
TWI38G1652 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 1.2e-07 59.3 51 52.9
arahy.Tifrunner.gnm1.ann1.XP1NDF Arachis hypogaea HOM05D006733 ORTHO05D008406 2.1e-07 58.5 58 50.0
Aqoxy4G00811 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 3.5e-07 57.8 52 55.8
Cfa020588 Carpinus fangiana HOM05D006733 ORTHO05D008406 3.5e-07 57.8 51 52.9
Cc05_g12060 Coffea canephora HOM05D006733 ORTHO05D008406 3.5e-07 57.8 51 51.0
Ca_24272_v3 Cicer arietinum L. HOM05D006733 ORTHO05D008406 4.6e-07 57.4 58 50.0
GSVIVG01014340001 Vitis vinifera HOM05D006733 ORTHO05D008406 4.6e-07 57.4 51 47.1
Haze_09425 Corylus avellana HOM05D006733 ORTHO05D008406 6.0e-07 57.0 51 51.0
MD11G1246800 Malus domestica HOM05D006733 ORTHO05D008406 7.8e-07 56.6 51 51.0
Medtr8g060850 Medicago truncatula HOM05D006733 ORTHO05D008406 7.8e-07 56.6 58 48.3
Migut.M00808 Erythranthe guttata HOM05D006733 ORTHO05D008406 1.3e-06 55.8 58 50.0
Oeu037948.1 Olea europaea HOM05D006733 ORTHO05D008406 1.7e-06 55.5 56 53.6
SalBow7G1032 Salvia bowleyana HOM05D006733 ORTHO05D008406 1.7e-06 55.5 58 51.7
Lj5g0017019 Lotus japonicus HOM05D006733 ORTHO05D008406 2.3e-06 55.1 49 53.1
CiPaw.11G169300 Carya illinoinensis HOM05D006733 ORTHO05D008406 3.0e-06 54.7 51 51.0
Glyma.06G242900 Glycine max HOM05D006733 ORTHO05D008406 3.0e-06 54.7 58 50.0
Prupe.4G181500 Prunus persica HOM05D006733 ORTHO05D008406 3.9e-06 54.3 51 51.0
Sc16g0006980 Simmondsia chinensis HOM05D006733 ORTHO05D008406 3.9e-06 54.3 51 51.0
TWI39G1253 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 3.9e-06 54.3 51 52.9
Actinidia12807 Actinidia chinensis HOM05D006733 ORTHO05D008406 8.6e-06 53.1 51 54.9
Rhsim06G0198600 Rhododendron simsii HOM05D006733 ORTHO05D008406 8.6e-06 53.1 50 50.0


User provided reference genes

Program Settings