Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 6.7e-37 156.8 75 100.0
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 8.2e-35 149.8 75 94.7
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.9e-31 138.7 76 89.5
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.0e-29 132.9 75 82.7
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 8.8e-29 129.8 76 82.9
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.1e-28 129.4 76 82.9
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.5e-28 129.0 75 85.3
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 9.7e-28 126.3 75 84.0
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 6.3e-27 123.6 75 81.3
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.1e-26 122.9 75 81.3
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.1e-26 122.9 75 81.3
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.4e-26 122.5 75 81.3
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.5e-25 119.0 77 74.0
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 2.2e-24 115.2 60 86.7
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 2.2e-24 115.2 60 86.7
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 2.2e-24 115.2 60 86.7
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.9e-23 112.1 60 85.0
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.9e-23 112.1 60 85.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 4.2e-23 110.9 59 84.7
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 7.2e-23 110.2 59 81.4
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 9.4e-23 109.8 59 83.1
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 1.2e-22 109.4 54 87.0
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.6e-22 109.0 59 83.1
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 2.1e-22 108.6 57 82.5
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.1e-22 108.6 63 77.8
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 2.1e-22 108.6 54 87.0
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.7e-22 108.2 54 87.0
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 3.6e-22 107.8 75 73.3
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 3.6e-22 107.8 66 74.2
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 4.7e-22 107.5 72 69.4
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 4.7e-22 107.5 60 80.0
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 4.7e-22 107.5 60 76.7
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 4.7e-22 107.5 61 75.4
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 6.1e-22 107.1 71 69.0
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 6.1e-22 107.1 65 75.4
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 8.0e-22 106.7 71 73.2
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.0e-21 106.3 62 77.4
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 1.4e-21 105.9 66 71.2
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.4e-21 105.9 66 71.2
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.4e-21 105.9 59 74.6
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.4e-21 105.9 66 71.2
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 1.4e-21 105.9 66 71.2
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 1.8e-21 105.5 66 74.2
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.8e-21 105.5 54 83.3
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.3e-21 105.1 73 67.1
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 2.3e-21 105.1 55 81.8
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 2.3e-21 105.1 62 72.6
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.0e-21 104.8 55 81.8
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.0e-21 104.8 62 74.2
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 3.0e-21 104.8 62 74.2
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.0e-21 104.8 62 74.2
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.0e-21 104.8 59 76.3
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.0e-21 104.8 59 76.3
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 3.0e-21 104.8 66 72.7
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 3.9e-21 104.4 61 75.4
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 5.2e-21 104.0 66 72.7
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 5.2e-21 104.0 60 75.0
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 5.2e-21 104.0 67 71.6
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 5.2e-21 104.0 66 71.2
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 6.7e-21 103.6 58 75.9
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 6.7e-21 103.6 50 90.0
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 6.7e-21 103.6 65 70.8
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 6.7e-21 103.6 58 79.3
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 6.7e-21 103.6 64 76.6
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 8.8e-21 103.2 78 65.4
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 8.8e-21 103.2 50 88.0
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 8.8e-21 103.2 55 80.0
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 8.8e-21 103.2 55 80.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 8.8e-21 103.2 54 83.3
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 1.1e-20 102.8 51 86.3
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.1e-20 102.8 62 77.4
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.5e-20 102.4 55 80.0
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 1.5e-20 102.4 66 71.2
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.5e-20 102.4 76 64.5
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.0e-20 102.1 64 71.9
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 2.0e-20 102.1 64 71.9
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.0e-20 102.1 66 74.2
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.0e-20 102.1 62 72.6
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 2.0e-20 102.1 62 72.6
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.0e-20 102.1 62 72.6
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 2.6e-20 101.7 52 82.7
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 2.6e-20 101.7 52 84.6
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 2.6e-20 101.7 64 71.9
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.6e-20 101.7 75 62.7
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 2.6e-20 101.7 67 68.7
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 2.6e-20 101.7 71 66.2
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 3.3e-20 101.3 66 69.7
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.3e-20 101.3 63 74.6
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 3.3e-20 101.3 54 79.6
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 3.3e-20 101.3 47 91.5
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 4.4e-20 100.9 70 65.7
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 4.4e-20 100.9 52 80.8
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.4e-20 100.9 76 63.2
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 4.4e-20 100.9 57 78.9
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 4.4e-20 100.9 55 80.0
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 4.4e-20 100.9 64 70.3
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 5.7e-20 100.5 62 72.6
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 7.4e-20 100.1 52 82.7
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 7.4e-20 100.1 72 63.9
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 7.4e-20 100.1 53 81.1
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 7.4e-20 100.1 53 81.1
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 7.4e-20 100.1 53 81.1
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 7.4e-20 100.1 64 70.3
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 7.4e-20 100.1 62 74.2
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 7.4e-20 100.1 63 74.6
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 7.4e-20 100.1 66 68.2
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 9.7e-20 99.8 72 63.9
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 9.7e-20 99.8 76 65.8
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 9.7e-20 99.8 59 74.6
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 9.7e-20 99.8 76 64.5
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 9.7e-20 99.8 67 71.6
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 9.7e-20 99.8 63 74.6
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.3e-19 99.4 67 67.2
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.3e-19 99.4 72 63.9
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.7e-19 99.0 58 70.7
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.7e-19 99.0 54 77.8
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.7e-19 99.0 54 77.8
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.7e-19 99.0 55 78.2
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 2.8e-19 98.2 62 67.7
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.8e-19 98.2 72 62.5
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 2.8e-19 98.2 75 62.7
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 2.8e-19 98.2 75 62.7
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 2.8e-19 98.2 73 64.4
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 3.7e-19 97.8 57 73.7
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 6.3e-19 97.1 54 77.8
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 8.2e-19 96.7 50 82.0
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.1e-18 96.3 58 74.1
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.1e-18 96.3 72 62.5
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.4e-18 95.9 46 87.0
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 2.4e-18 95.1 62 62.9
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 2.4e-18 95.1 62 62.9
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.4e-18 95.1 60 75.0
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 3.1e-18 94.7 63 68.3
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 3.1e-18 94.7 51 76.5
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 4.1e-18 94.4 54 72.2
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 7.0e-18 93.6 43 93.0
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 7.0e-18 93.6 55 74.5
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.6e-17 92.4 46 82.6
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.6e-17 92.4 46 82.6
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 2.9e-16 88.2 47 74.5
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.9e-16 88.2 49 79.6
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 5.0e-16 87.4 80 52.5
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 5.0e-16 87.4 59 62.7
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 6.5e-16 87.0 50 72.0
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 6.5e-16 87.0 50 72.0
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 8.5e-16 86.7 56 66.1
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 9.4e-15 83.2 52 69.2
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 9.4e-15 83.2 42 81.0
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 9.4e-15 83.2 75 56.0
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 8.0e-14 80.1 81 51.9
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 2.6e-12 75.1 42 81.0
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 6.3e-11 70.5 57 61.4
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.8e-10 68.9 60 60.0
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 3.6e-06 54.7 35 71.4


User provided reference genes

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