Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 4.7e-80 301.2 159 100.0
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 1.7e-50 203.0 138 82.6
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.6e-40 169.9 117 78.6
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 4.3e-33 145.2 95 78.9
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 4.3e-33 145.2 95 78.9
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 7.3e-33 144.4 94 79.8
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 7.3e-33 144.4 94 79.8
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.6e-32 143.3 95 77.9
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.7e-13 80.1 125 37.6
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.7e-13 80.1 125 38.4
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 2.2e-13 79.7 125 36.8
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.9e-13 78.6 127 38.6
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 4.9e-13 78.6 133 38.3
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 8.4e-13 77.8 125 37.6
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 1.4e-12 77.0 121 36.4
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.4e-12 77.0 131 34.4
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.9e-12 76.6 127 36.2
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 3.2e-12 75.9 125 36.0
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 3.2e-12 75.9 121 34.7
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 7.1e-12 74.7 125 35.2
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 1.2e-11 73.9 125 37.6
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.1e-11 73.2 118 33.9
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 2.7e-11 72.8 125 36.8
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 3.5e-11 72.4 123 35.8
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 6.0e-11 71.6 125 35.2
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 6.0e-11 71.6 121 33.1
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 7.9e-11 71.2 125 36.8
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.0e-10 70.9 125 35.2
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.0e-10 70.9 125 36.0
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.0e-10 70.9 125 36.0
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.0e-10 70.9 125 36.0
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.0e-10 70.9 125 35.2
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.3e-10 70.5 125 36.8
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.7e-10 70.1 125 35.2
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 1.7e-10 70.1 125 36.0
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-10 69.7 125 32.8
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.3e-10 69.7 125 32.8
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 2.3e-10 69.7 125 32.8
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 2.3e-10 69.7 127 37.0
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.3e-10 69.7 130 35.4
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.3e-10 69.7 131 36.6
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.3e-10 69.7 125 36.0
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 2.3e-10 69.7 126 35.7
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 3.0e-10 69.3 125 36.8
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 3.0e-10 69.3 125 34.4
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 3.0e-10 69.3 127 33.1
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 3.9e-10 68.9 140 28.6
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 3.9e-10 68.9 125 32.8
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.9e-10 68.9 125 35.2
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 3.9e-10 68.9 127 36.2
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 3.9e-10 68.9 125 32.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 6.6e-10 68.2 125 34.4
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 6.6e-10 68.2 125 35.2
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 6.6e-10 68.2 125 34.4
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 8.7e-10 67.8 125 34.4
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 8.7e-10 67.8 125 34.4
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 8.7e-10 67.8 125 34.4
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 8.7e-10 67.8 125 34.4
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 8.7e-10 67.8 125 36.8
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 8.7e-10 67.8 125 36.8
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.1e-09 67.4 141 31.9
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-09 67.4 125 34.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.1e-09 67.4 127 35.4
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.5e-09 67.0 127 35.4
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 1.5e-09 67.0 136 36.0
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 1.9e-09 66.6 125 34.4
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.9e-09 66.6 127 35.4
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.9e-09 66.6 125 35.2
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 2.5e-09 66.2 125 34.4
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.5e-09 66.2 118 36.4
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 2.5e-09 66.2 127 34.6
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 2.5e-09 66.2 126 36.5
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.5e-09 66.2 125 36.0
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 4.3e-09 65.5 125 34.4
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 4.3e-09 65.5 125 35.2
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 4.3e-09 65.5 118 35.6
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 4.3e-09 65.5 132 34.1
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.3e-09 65.5 118 33.1
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 4.3e-09 65.5 125 35.2
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 5.6e-09 65.1 125 33.6
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 5.6e-09 65.1 125 36.0
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 7.3e-09 64.7 125 33.6
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 7.3e-09 64.7 127 33.1
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 7.3e-09 64.7 125 33.6
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 7.3e-09 64.7 127 33.9
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 7.3e-09 64.7 132 33.3
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 7.3e-09 64.7 113 35.4
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 9.6e-09 64.3 127 34.6
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 9.6e-09 64.3 125 32.8
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 9.6e-09 64.3 118 33.9
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.3e-08 63.9 125 33.6
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-08 63.9 121 31.4
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.3e-08 63.9 121 31.4
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.6e-08 63.5 118 33.1
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.8e-08 62.8 127 32.3
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.8e-08 62.8 127 32.3
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 3.6e-08 62.4 125 34.4
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 4.8e-08 62.0 54 55.6
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 8.1e-08 61.2 125 32.8
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.8e-07 60.1 125 32.0
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 4.0e-07 58.9 89 37.1
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 5.3e-07 58.5 127 32.3
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 9.0e-07 57.8 94 36.2
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 9.0e-07 57.8 126 29.4
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 9.0e-07 57.8 122 31.1
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.5e-06 57.0 145 29.7
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 2.0e-06 56.6 126 33.3
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 4.5e-06 55.5 125 30.4
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 4.5e-06 55.5 122 27.9
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 7.6e-06 54.7 123 29.3
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 9.9e-06 54.3 85 38.8
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 9.9e-06 54.3 118 30.5


User provided reference genes

Program Settings