Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 2.3e-169 599.0 335 100.0
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 2.1e-143 512.7 344 82.6
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.9e-131 473.0 339 79.1
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 3.6e-130 468.8 341 78.0
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 1.3e-127 460.3 342 75.1
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 1.2e-125 453.8 342 74.3
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 4.5e-125 451.8 342 75.1
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 1.3e-124 450.3 342 74.9
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 1.3e-124 450.3 342 74.9
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 2.5e-123 446.0 337 74.2
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 3.0e-113 412.5 338 71.6
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 4.4e-112 408.7 340 70.9
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 2.7e-109 399.4 337 69.4
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 1.1e-107 394.0 339 69.9
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 5.5e-107 391.7 305 74.8
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 1.5e-91 340.5 230 80.0
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 4.4e-88 328.9 338 60.9
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 9.5e-75 284.6 231 71.4
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 4.0e-57 226.1 338 50.6
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 2.6e-48 196.8 396 41.4
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.3e-47 194.5 396 40.2
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 1.0e-44 184.9 385 42.1
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.8e-44 184.1 386 42.0
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 5.1e-44 182.6 386 40.9
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 9.6e-43 178.3 391 41.4
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 9.6e-43 178.3 388 39.7
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 1.6e-42 177.6 391 39.6
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 3.1e-41 173.3 392 39.8
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 3.1e-41 173.3 392 39.8
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 1.5e-40 171.0 391 40.7
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 1.7e-39 167.5 393 39.2
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 2.2e-39 167.2 342 40.1
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 2.9e-39 166.8 392 38.8
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 4.9e-39 166.0 392 40.3
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 1.4e-38 164.5 392 40.1
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 7.9e-37 158.7 393 38.2
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.1e-35 154.8 284 44.4
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 4.8e-26 122.9 349 33.5
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 6.9e-25 119.0 354 35.3
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 9.0e-25 118.6 353 32.0
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 1.5e-24 117.9 347 32.6
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 1.9e-22 110.9 281 38.8
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 6.1e-21 105.9 344 33.7
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 5.1e-20 102.8 356 30.6
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 3.3e-19 100.1 350 30.6
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 5.7e-19 99.4 350 32.0
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 1.7e-18 97.8 357 30.5
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 4.8e-18 96.3 354 31.1
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 4.8e-18 96.3 351 29.6
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 1.8e-17 94.4 344 30.8
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 3.1e-17 93.6 345 30.4
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 4.1e-17 93.2 365 30.7
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 4.1e-17 93.2 339 28.0
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 1.3e-15 88.2 347 30.0
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 1.7e-15 87.8 341 30.8
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 5.0e-15 86.3 347 29.1
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 5.0e-15 86.3 348 27.9
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 1.1e-14 85.1 337 29.1
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 4.2e-14 83.2 358 32.7
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 9.4e-14 82.0 354 30.5
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 7.9e-13 79.0 137 43.1
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 7.9e-13 79.0 363 29.2
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 1.8e-12 77.8 350 27.1
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 3.9e-12 76.6 340 29.4
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 1.5e-11 74.7 140 45.0
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 3.3e-11 73.6 328 30.5
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 3.3e-11 73.6 342 26.0
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 5.7e-11 72.8 359 27.9
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.8e-10 70.5 201 36.8
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 3.7e-10 70.1 337 28.2
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 6.3e-10 69.3 391 27.6
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 8.2e-10 68.9 364 27.2
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 1.1e-09 68.6 337 30.6
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 1.8e-09 67.8 337 27.3
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 1.8e-09 67.8 350 30.6
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 2.4e-09 67.4 179 33.5
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 3.1e-09 67.0 205 33.2
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 3.1e-09 67.0 192 33.3
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 4.1e-09 66.6 358 28.5
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 4.1e-09 66.6 349 28.9
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 9.1e-09 65.5 341 27.0
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 2.0e-08 64.3 347 28.0
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 2.6e-08 63.9 192 32.8
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 3.4e-08 63.5 196 33.2
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 3.4e-08 63.5 326 27.6
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 3.4e-08 63.5 235 31.5
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 7.7e-08 62.4 339 29.5
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 1.3e-07 61.6 354 27.1
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 1.3e-07 61.6 364 28.6
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 1.3e-07 61.6 345 27.8
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 1.7e-07 61.2 352 28.4
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.9e-07 60.5 363 29.2
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 1.4e-06 58.2 132 35.6
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 4.2e-06 56.6 203 34.0
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 5.5e-06 56.2 362 25.1
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 7.2e-06 55.8 229 28.8
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 7.2e-06 55.8 363 28.9


User provided reference genes

Program Settings