Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 1.2e-133 479.9 262 100.0
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 1.1e-121 440.3 263 93.9
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 3.7e-114 415.2 268 85.4
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.3e-106 390.2 278 79.9
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 3.8e-103 378.6 277 78.3
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.3e-98 363.6 277 75.1
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 6.3e-98 361.3 277 74.7
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 6.3e-98 361.3 277 74.7
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 1.4e-97 360.1 277 74.4
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 9.0e-97 357.5 277 74.4
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.7e-87 326.6 276 70.7
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 1.0e-76 290.8 277 63.5
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 3.5e-64 249.2 229 64.2
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 8.5e-63 244.6 288 52.8
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.2e-62 242.3 215 65.1
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 4.2e-62 242.3 215 65.1
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 7.2e-62 241.5 226 61.9
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 9.4e-62 241.1 264 56.1
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.2e-61 240.7 262 55.0
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.6e-61 240.4 257 56.0
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 8.0e-61 238.0 206 63.1
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.0e-60 237.7 258 57.8
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.0e-60 237.7 260 56.9
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 2.3e-60 236.5 269 53.9
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 2.3e-60 236.5 255 56.1
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 3.0e-60 236.1 218 62.4
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 6.8e-60 235.0 189 68.8
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 1.5e-59 233.8 286 53.5
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 3.4e-59 232.6 262 55.3
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 3.4e-59 232.6 252 55.6
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 3.4e-59 232.6 221 63.8
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 5.7e-59 231.9 213 64.8
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 5.7e-59 231.9 265 55.8
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 7.5e-59 231.5 264 56.1
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 9.8e-59 231.1 233 57.9
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.3e-58 230.7 260 54.6
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.7e-58 230.3 256 55.1
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 2.2e-58 229.9 212 66.0
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 2.8e-58 229.6 264 54.9
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 6.3e-58 228.4 269 53.5
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 8.3e-58 228.0 218 60.6
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 1.4e-57 227.3 286 53.5
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.8e-57 226.9 198 64.1
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.4e-57 226.5 249 54.6
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 3.1e-57 226.1 219 60.7
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 4.1e-57 225.7 208 64.9
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 4.1e-57 225.7 270 53.3
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 7.0e-57 224.9 202 60.4
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 7.0e-57 224.9 220 59.1
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.2e-56 224.2 202 61.4
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.2e-56 224.2 209 60.3
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 2.0e-56 223.4 260 53.8
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 2.7e-56 223.0 260 52.7
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 2.7e-56 223.0 241 56.0
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 2.7e-56 223.0 247 55.5
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.5e-56 222.2 294 50.7
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 5.9e-56 221.9 238 56.3
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 5.9e-56 221.9 282 52.1
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 7.7e-56 221.5 210 63.3
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 1.0e-55 221.1 256 54.7
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 2.3e-55 219.9 204 60.8
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.3e-55 219.9 221 57.5
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 3.8e-55 219.2 219 60.3
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 3.8e-55 219.2 267 53.6
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 5.0e-55 218.8 262 51.5
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 5.0e-55 218.8 244 52.0
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 6.6e-55 218.4 279 51.3
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 6.6e-55 218.4 229 57.2
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 6.6e-55 218.4 263 51.7
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.1e-54 217.6 220 58.6
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 1.1e-54 217.6 247 54.7
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 4.2e-54 215.7 218 57.8
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 1.6e-53 213.8 268 49.6
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.6e-53 213.8 219 58.0
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 1.8e-52 210.3 299 46.8
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 5.2e-52 208.8 203 61.1
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.5e-51 207.2 227 54.2
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 3.7e-50 202.6 277 49.5
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 3.7e-50 202.6 277 49.5
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 4.9e-50 202.2 279 47.0
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 8.3e-50 201.4 277 49.1
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 1.8e-49 200.3 219 58.9
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 9.2e-49 198.0 264 48.9
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 9.2e-49 198.0 264 48.9
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 3.5e-48 196.1 232 52.2
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.3e-47 194.1 260 50.0
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.7e-47 193.7 195 57.4
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 5.0e-47 192.2 173 65.9
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 5.0e-47 192.2 173 65.9
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 5.0e-47 192.2 217 54.4
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.5e-46 189.9 205 55.6
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.6e-46 188.7 217 54.4
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 8.0e-45 184.9 232 50.9
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 3.1e-44 183.0 174 62.6
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.2e-43 181.0 184 58.7
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 2.9e-42 176.4 201 56.7
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 2.9e-42 176.4 201 54.2
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.6e-40 170.6 209 51.7
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 2.7e-40 169.9 211 50.7
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 3.3e-38 162.9 139 66.9
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.1e-37 160.2 206 47.6
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 6.2e-37 158.7 158 59.5
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 8.0e-37 158.3 211 47.9
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.8e-36 157.1 211 48.3
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 3.1e-36 156.4 186 50.0
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 5.2e-36 155.6 214 51.4
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.7e-34 150.6 134 64.9
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 8.3e-34 148.3 185 45.9
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 6.6e-31 138.7 198 44.4
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 1.1e-30 137.9 171 50.3
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.5e-30 137.5 102 71.6
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.5e-30 136.7 192 46.4
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 4.3e-30 136.0 189 47.1
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 5.6e-30 135.6 222 45.0
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 4.7e-29 132.5 251 38.6
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 3.1e-28 129.8 136 55.1
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 2.0e-27 127.1 74 90.5
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 3.4e-27 126.3 136 58.8
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 2.1e-24 117.1 201 43.8
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 2.7e-24 116.7 215 41.9
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 1.2e-21 107.8 133 54.1
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 2.1e-21 107.1 151 46.4
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 3.1e-20 103.2 163 43.6
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 4.0e-20 102.8 179 43.0
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 7.6e-19 98.6 63 84.1
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 4.9e-18 95.9 122 43.4
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 1.2e-16 91.3 217 37.3
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 1.0e-15 88.2 136 42.6
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.3e-15 87.8 72 66.7
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 6.9e-12 75.5 120 49.2
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 6.4e-10 68.9 164 33.5
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 2.4e-09 67.0 178 27.5
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 1.3e-07 61.2 61 55.7
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.5e-06 57.8 43 69.8
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 1.5e-06 57.8 47 61.7


User provided reference genes

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