Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 5.6e-311 1070.5 687 100.0
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.5e-236 823.2 704 73.3
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 3.8e-227 792.0 702 71.8
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 5.6e-215 751.5 698 76.6
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 2.9e-211 739.2 710 70.1
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 2.6e-183 646.4 701 71.0
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.2e-180 637.5 699 71.4
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.1e-175 620.9 698 69.2
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 3.3e-175 619.4 695 69.1
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 3.3e-175 619.4 695 69.1
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.6e-172 610.5 708 59.5
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 4.2e-154 549.3 416 86.5
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.0e-139 501.5 647 55.8
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 3.7e-126 456.4 622 52.7
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 3.5e-124 449.9 622 52.6
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 4.6e-124 449.5 622 52.7
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 2.7e-100 370.5 811 38.8
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.8e-91 341.3 551 52.1
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 3.3e-90 337.0 817 37.2
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.6e-89 334.7 779 38.6
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.3e-86 325.1 784 37.4
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.5e-85 320.9 785 37.3
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.5e-85 320.9 772 37.6
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.2e-85 320.1 752 40.3
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-84 318.5 756 40.3
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 1.2e-84 318.5 789 36.8
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.6e-84 318.2 781 37.0
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 7.9e-84 315.8 784 36.5
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 5.1e-83 313.2 808 38.4
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.5e-82 311.6 793 37.8
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.9e-82 311.2 784 36.7
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.5e-82 310.8 791 36.5
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 5.7e-82 309.7 796 37.7
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 5.7e-82 309.7 750 39.1
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 6.3e-81 306.2 771 38.0
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 6.3e-81 306.2 762 36.2
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.1e-80 305.4 787 37.2
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 3.1e-80 303.9 787 35.6
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.9e-80 302.8 784 37.8
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 6.9e-80 302.8 777 38.4
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.5e-79 301.6 784 36.4
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.3e-78 298.5 773 38.6
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 2.2e-78 297.7 755 39.3
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 5.0e-78 296.6 777 38.0
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 6.5e-78 296.2 788 36.2
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 3.2e-77 293.9 785 38.7
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.2e-77 293.9 771 34.9
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.2e-77 293.5 766 34.9
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 3.6e-76 290.4 770 36.4
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 4.6e-76 290.0 768 40.9
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 5.1e-75 286.6 758 36.7
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.5e-74 285.0 777 37.2
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 1.5e-74 285.0 735 38.8
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.6e-74 284.3 776 36.7
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.8e-73 280.8 805 35.5
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.8e-73 280.8 803 36.4
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.4e-72 278.5 776 36.9
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.5e-71 275.0 759 34.7
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 3.4e-71 273.9 763 35.8
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 5.9e-71 273.1 765 36.1
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.2e-70 271.2 722 38.5
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.9e-69 268.1 684 38.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 2.7e-68 264.2 718 35.0
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 7.9e-68 262.7 738 40.8
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.3e-67 261.2 791 35.4
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 5.2e-67 260.0 740 35.1
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 6.7e-67 259.6 761 37.2
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.1e-66 258.8 736 37.4
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-66 258.8 688 36.8
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 7.4e-66 256.1 757 36.9
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.1e-64 252.3 833 35.3
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.1e-64 252.3 711 34.9
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 3.1e-64 250.8 668 39.4
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.1e-64 250.8 740 34.7
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.1e-64 250.8 770 36.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 5.3e-64 250.0 791 32.4
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 9.1e-64 249.2 862 34.8
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 2.0e-63 248.1 853 33.9
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.6e-63 247.7 769 35.6
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.5e-63 246.9 765 35.4
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 5.9e-63 246.5 778 35.9
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.7e-63 246.1 644 37.3
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.3e-62 245.4 730 35.8
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 8.5e-62 242.7 721 38.1
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 5.5e-61 240.0 743 32.0
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 7.2e-61 239.6 707 33.5
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.7e-60 237.7 713 35.5
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.7e-60 236.9 766 33.2
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 8.0e-60 236.1 766 35.0
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.4e-59 235.3 754 38.6
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.5e-58 231.9 700 33.3
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.7e-58 229.9 751 33.8
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 2.2e-57 228.0 755 36.2
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.7e-57 227.3 725 34.2
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 6.3e-57 226.5 761 35.7
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 8.2e-57 226.1 690 34.5
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.4e-56 224.6 708 33.3
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 4.1e-56 223.8 826 33.9
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 9.1e-56 222.6 612 37.4
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.7e-55 221.1 756 34.3
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 2.7e-55 221.1 714 31.8
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 7.7e-55 219.5 673 34.9
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.2e-54 218.0 683 34.6
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 2.2e-54 218.0 712 33.6
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 3.8e-54 217.2 723 35.1
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.1e-53 215.7 713 32.5
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.5e-53 214.5 712 34.1
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.2e-53 213.8 755 33.2
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.0e-51 209.1 770 34.8
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 5.2e-51 206.8 741 32.0
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 6.8e-51 206.5 577 38.6
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 2.6e-50 204.5 809 30.4
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 3.4e-50 204.1 678 33.9
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 5.7e-50 203.4 682 34.9
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-49 201.8 695 33.1
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.4e-48 198.0 699 35.1
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 4.1e-48 197.2 795 34.0
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 7.0e-48 196.4 691 33.0
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-47 195.7 811 34.8
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 3.5e-47 194.1 609 30.7
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 4.5e-47 193.7 678 32.7
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 5.9e-47 193.4 803 32.6
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.1e-45 189.1 723 32.5
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 2.5e-45 188.0 693 35.6
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.2e-45 187.6 680 32.2
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 6.1e-44 183.3 798 33.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.8e-43 181.8 777 31.9
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 8.8e-43 179.5 699 32.9
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.0e-42 178.3 738 29.1
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.0e-42 178.3 620 33.1
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.5e-42 176.4 439 36.2
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.2e-41 174.9 680 32.6
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.6e-39 168.7 680 32.5
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.5e-37 162.2 755 30.6
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 4.3e-37 160.6 733 29.1
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 2.1e-36 158.3 696 30.9
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 4.7e-36 157.1 664 31.2
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.1e-32 146.0 168 54.2
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 5.4e-32 143.7 668 30.7
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 5.4e-32 143.7 652 31.7
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 2.5e-29 134.8 159 49.7
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 6.2e-28 130.2 877 27.0
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.8e-27 128.6 214 44.4
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.3e-27 128.3 755 28.7
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 3.4e-26 124.4 573 30.5
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 3.4e-26 124.4 863 26.2
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 5.8e-26 123.6 183 45.4
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.9e-25 121.3 283 42.0
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.6e-23 115.5 796 27.9
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 1.7e-22 112.1 877 28.3
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 7.3e-21 106.7 142 48.6
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 3.6e-20 104.4 286 35.0
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.7e-20 104.0 324 36.4
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.4e-18 97.4 657 27.1
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 4.9e-17 94.0 822 25.5
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 6.4e-17 93.6 446 30.5
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 8.3e-17 93.2 274 39.8
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.4e-16 91.7 194 39.2
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 3.5e-15 87.8 196 38.8
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.0e-14 84.7 188 34.0
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 5.6e-13 80.5 163 40.5
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 7.3e-13 80.1 111 52.3
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 3.6e-12 77.8 50 80.0
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.8e-11 73.6 126 52.4
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.1e-08 64.3 639 24.7
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.2e-07 62.8 30 76.7
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.6e-07 62.4 238 27.3


User provided reference genes

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