Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 9.0e-90 333.6 169 100.0
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 3.9e-85 318.2 169 95.3
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 5.9e-81 304.3 171 90.6
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 7.7e-81 303.9 169 91.1
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 5.5e-79 297.7 169 89.9
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 3.0e-77 292.0 170 86.5
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 1.4e-69 266.5 171 82.5
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 3.3e-68 261.9 172 81.4
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 4.4e-68 261.5 173 81.5
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 5.7e-68 261.2 173 81.5
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 3.2e-63 245.4 160 81.2
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 5.9e-57 224.6 174 71.3
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 1.0e-45 187.2 181 60.2
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 3.1e-34 149.1 186 52.7
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 9.2e-34 147.5 177 50.8
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.6e-33 146.7 186 51.6
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 2.7e-33 146.0 186 51.6
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 5.6e-31 138.3 189 48.7
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 5.6e-31 138.3 174 49.4
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 1.4e-29 133.7 179 49.7
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 1.4e-29 133.7 192 45.8
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 1.8e-29 133.3 189 47.1
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 4.0e-29 132.1 186 44.6
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 4.0e-29 132.1 186 44.6
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.0e-28 129.8 186 44.6
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 2.0e-28 129.8 183 44.8
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 2.6e-28 129.4 178 48.3
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 2.6e-28 129.4 182 45.6
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 3.4e-28 129.0 186 44.1
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 3.4e-28 129.0 187 44.9
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 5.8e-28 128.3 186 44.6
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 7.5e-28 127.9 186 44.1
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.3e-27 127.1 183 48.6
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 1.7e-27 126.7 190 43.7
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 4.9e-27 125.2 186 42.5
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 1.1e-26 124.0 176 43.8
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 2.4e-26 122.9 184 45.7
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 2.4e-26 122.9 186 41.4
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 2.4e-26 122.9 184 41.3
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 7.0e-26 121.3 189 42.3
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 9.2e-26 120.9 193 44.0
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 9.2e-26 120.9 187 44.9
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 1.2e-25 120.6 147 51.0
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 1.2e-25 120.6 159 46.5
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 1.6e-25 120.2 157 49.7
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 1.6e-25 120.2 198 40.4
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 2.3e-24 116.3 158 43.7
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 5.0e-24 115.2 170 42.9
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 6.6e-24 114.8 180 47.2
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 1.1e-23 114.0 160 45.0
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 1.5e-23 113.6 184 41.3
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 2.5e-23 112.8 182 40.7
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 7.3e-23 111.3 184 40.8
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 9.5e-23 110.9 187 38.0
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 2.8e-22 109.4 182 39.6
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 1.1e-21 107.5 186 41.9
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 2.3e-21 106.3 153 43.1
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 2.3e-21 106.3 195 39.5
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 4.0e-21 105.5 180 42.2
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 4.0e-21 105.5 158 41.8
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 4.0e-21 105.5 207 39.1
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 5.2e-21 105.1 205 37.6
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 8.9e-21 104.4 212 38.7
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 1.2e-20 104.0 177 40.1
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 2.6e-20 102.8 161 42.9
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 9.8e-20 100.9 202 36.1
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 1.3e-19 100.5 204 37.7
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 2.9e-19 99.4 158 39.9
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 2.4e-18 96.3 189 37.6
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 1.2e-17 94.0 214 35.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.3e-16 90.5 144 43.1
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 1.7e-16 90.1 165 36.4
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 3.9e-16 89.0 154 40.3
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 1.1e-15 87.4 178 38.8
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 1.1e-15 87.4 215 32.1
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 1.9e-15 86.7 147 38.1
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 3.3e-15 85.9 154 40.9
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 9.5e-15 84.3 149 39.6
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 9.5e-15 84.3 151 39.1
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.2e-14 84.0 153 41.2
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 1.6e-14 83.6 159 39.6
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 1.6e-14 83.6 153 41.2
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 2.1e-14 83.2 217 32.3
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.8e-13 80.1 153 37.9
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 3.1e-13 79.3 143 38.5
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 5.2e-13 78.6 111 46.8
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 8.9e-13 77.8 146 37.7
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 2.6e-12 76.3 176 35.8
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 3.4e-12 75.9 194 33.5
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 3.7e-11 72.4 154 35.7
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 6.4e-11 71.6 130 39.2
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 1.6e-09 67.0 173 32.4
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.5e-07 60.5 109 37.6
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 1.5e-07 60.5 28 89.3
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.9e-07 60.1 30 76.7
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 1.9e-07 60.1 69 49.3
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 1.9e-07 60.1 58 51.7
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 7.3e-07 58.2 32 68.8
SEGI_16996 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 1.6e-06 57.0 56 51.8


User provided reference genes

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