Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 2.8e-76 288.5 142 100.0
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 5.3e-67 257.7 142 90.1
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.7e-65 252.7 142 88.7
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.2e-63 246.5 143 86.7
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 1.9e-61 239.2 143 83.9
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 4.8e-60 234.6 144 83.3
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 6.9e-59 230.7 145 81.4
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.2e-58 229.9 143 82.5
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.5e-58 229.6 143 82.5
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.7e-57 226.1 144 81.9
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 3.8e-57 224.9 144 80.6
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 3.8e-57 224.9 144 80.6
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 3.8e-57 224.9 144 80.6
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 2.5e-56 222.2 144 80.6
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 2.7e-55 218.8 143 80.4
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 2.7e-55 218.8 143 80.4
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 1.8e-54 216.1 143 79.7
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.4e-48 196.4 143 71.3
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 5.5e-48 194.5 123 81.3
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.1e-39 166.0 142 59.2
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 5.2e-38 161.4 143 60.8
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.1e-35 153.7 143 58.7
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 8.6e-17 90.9 83 54.2
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 2.1e-15 86.3 109 43.1
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 6.1e-15 84.7 133 41.4
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 6.1e-15 84.7 111 46.8
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 8.0e-15 84.3 67 53.7
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.8e-14 83.2 94 47.9
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 4.0e-14 82.0 102 49.0
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 4.0e-14 82.0 92 47.8
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 5.2e-14 81.6 126 41.3
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 8.9e-14 80.9 134 39.6
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 8.9e-14 80.9 93 44.1
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 8.9e-14 80.9 122 41.0
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 1.2e-13 80.5 117 40.2
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.2e-13 80.5 81 48.1
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 2.0e-13 79.7 92 43.5
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 3.4e-13 79.0 95 45.3
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 4.4e-13 78.6 98 40.8
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 5.7e-13 78.2 103 43.7
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 5.7e-13 78.2 122 39.3
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 7.5e-13 77.8 91 42.9
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 9.8e-13 77.4 95 43.2
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 9.8e-13 77.4 74 51.4
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.7e-12 76.6 117 39.3
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.7e-12 76.6 114 41.2
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.8e-12 75.9 127 35.4
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 2.8e-12 75.9 88 43.2
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 2.8e-12 75.9 138 37.0
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 3.7e-12 75.5 82 46.3
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 3.7e-12 75.5 109 39.4
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 3.7e-12 75.5 70 50.0
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.3e-12 74.7 115 41.7
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 6.3e-12 74.7 87 44.8
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 6.3e-12 74.7 110 40.0
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 1.1e-11 73.9 102 39.2
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.1e-11 73.9 103 41.7
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 1.1e-11 73.9 61 55.7
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.1e-11 73.9 92 45.7
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.1e-11 73.9 131 39.7
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 1.4e-11 73.6 87 42.5
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.4e-11 73.6 95 43.2
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 2.4e-11 72.8 120 38.3
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 2.4e-11 72.8 94 44.7
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 2.4e-11 72.8 78 42.3
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 3.1e-11 72.4 87 48.3
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 3.1e-11 72.4 121 36.4
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 4.1e-11 72.0 62 54.8
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.1e-11 72.0 62 54.8
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.1e-11 72.0 106 40.6
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 4.1e-11 72.0 106 40.6
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 4.1e-11 72.0 121 38.0
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 4.1e-11 72.0 101 39.6
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 4.1e-11 72.0 87 40.2
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 5.4e-11 71.6 93 41.9
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.4e-11 71.6 75 49.3
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.4e-11 71.6 75 49.3
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 5.4e-11 71.6 92 44.6
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.0e-11 71.2 62 54.8
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.0e-11 71.2 92 44.6
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 7.0e-11 71.2 63 50.8
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 7.0e-11 71.2 91 39.6
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 9.2e-11 70.9 115 35.7
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 9.2e-11 70.9 72 47.2
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.2e-10 70.5 60 53.3
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.2e-10 70.5 93 39.8
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 1.2e-10 70.5 105 42.9
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 1.2e-10 70.5 72 45.8
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 1.6e-10 70.1 99 48.5
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.6e-10 70.1 88 44.3
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.7e-10 69.3 86 39.5
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 2.7e-10 69.3 119 32.8
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 2.7e-10 69.3 69 46.4
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.5e-10 68.9 69 47.8
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 4.5e-10 68.6 58 58.6
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 5.9e-10 68.2 58 58.6
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 7.8e-10 67.8 80 48.8
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.0e-09 67.4 71 42.3
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.0e-09 67.4 66 53.0
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.3e-09 67.0 118 38.1
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 1.3e-09 67.0 63 49.2
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.7e-09 66.6 89 43.8
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.7e-09 66.6 62 51.6
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 2.9e-09 65.9 106 36.8
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 3.8e-09 65.5 70 47.1
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 3.8e-09 65.5 60 51.7
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 5.0e-09 65.1 69 53.6
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 8.6e-09 64.3 62 54.8
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.5e-08 63.5 71 49.3
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 4.3e-08 62.0 54 57.4
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 5.6e-08 61.6 87 36.8
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 5.6e-08 61.6 102 35.3
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 9.5e-08 60.8 101 37.6
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 9.5e-08 60.8 92 41.3
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 2.1e-07 59.7 87 40.2
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.1e-07 59.7 55 50.9
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 2.1e-07 59.7 100 37.0
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 2.8e-07 59.3 36 66.7
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.8e-07 59.3 58 46.6
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 2.8e-07 59.3 42 54.8
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 3.6e-07 58.9 55 52.7
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 3.6e-07 58.9 56 50.0
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 4.7e-07 58.5 88 38.6
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 4.7e-07 58.5 108 29.6
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 4.7e-07 58.5 102 36.3
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 8.0e-07 57.8 67 44.8
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.0e-06 57.4 101 37.6
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 1.0e-06 57.4 62 46.8
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 1.8e-06 56.6 60 45.0
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 2.3e-06 56.2 65 47.7
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 2.3e-06 56.2 61 44.3
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.3e-06 56.2 55 45.5
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 2.3e-06 56.2 77 40.3
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 4.0e-06 55.5 78 43.6


User provided reference genes

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