Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.2e-113 413.3 221 100.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 3.9e-109 398.3 221 95.5
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.4e-106 389.8 221 92.8
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 9.0e-106 387.1 221 93.2
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.3e-104 383.3 221 91.4
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 2.2e-104 382.5 221 91.0
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 4.2e-103 378.3 221 89.1
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 4.2e-103 378.3 221 89.1
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 5.1e-101 371.3 222 89.2
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 5.1e-101 371.3 222 89.2
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-100 369.8 223 87.4
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.5e-100 369.8 223 87.4
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-100 369.4 222 88.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 2.5e-100 369.0 222 88.7
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 4.3e-100 368.2 222 88.7
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 9.6e-100 367.1 222 88.3
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 5.8e-97 357.8 221 86.9
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 3.9e-93 345.1 221 82.8
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 6.7e-93 344.4 221 81.0
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.6e-91 339.7 221 81.9
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.6e-91 339.7 221 79.6
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 6.3e-91 337.8 221 79.6
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 8.2e-91 337.4 221 79.6
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.8e-90 336.3 222 79.3
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.8e-90 336.3 218 79.8
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 4.1e-90 335.1 211 82.5
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.3e-90 334.7 221 77.8
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.3e-90 334.7 221 78.3
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 6.9e-90 334.3 220 81.4
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.0e-89 332.8 220 79.5
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.6e-89 332.4 218 78.4
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 4.5e-89 331.6 218 80.3
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.3e-88 330.1 220 78.2
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.7e-88 329.7 223 79.4
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.7e-88 329.7 223 78.0
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.7e-88 329.7 218 77.5
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.7e-88 329.7 218 78.4
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 2.2e-88 329.3 218 80.3
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.2e-88 329.3 221 76.9
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 2.2e-88 329.3 220 78.6
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-88 329.3 220 79.5
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.2e-88 329.3 220 79.5
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.2e-88 329.3 222 79.7
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 3.8e-88 328.6 221 78.3
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 3.8e-88 328.6 220 77.3
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 5.0e-88 328.2 218 76.6
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 8.4e-88 327.4 221 78.3
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 8.4e-88 327.4 221 76.9
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.1e-87 327.0 220 79.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.1e-87 327.0 221 76.9
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.1e-87 327.0 219 78.1
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 1.1e-87 327.0 221 78.3
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 1.4e-87 326.6 221 78.3
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.9e-87 326.2 221 77.8
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 2.5e-87 325.9 219 78.1
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 3.2e-87 325.5 220 80.0
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 3.2e-87 325.5 222 77.9
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.2e-87 325.1 220 76.4
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 5.5e-87 324.7 218 77.1
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.5e-87 324.7 221 76.5
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 7.2e-87 324.3 222 77.5
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.3e-87 323.9 219 77.2
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.2e-86 323.6 221 77.4
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.6e-86 323.2 221 75.1
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.7e-86 322.4 217 78.3
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 2.7e-86 322.4 220 75.5
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 2.7e-86 322.4 221 77.8
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.6e-86 321.6 221 76.5
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 4.6e-86 321.6 222 76.6
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 4.6e-86 321.6 221 76.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 7.9e-86 320.9 220 75.5
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.9e-86 320.9 221 76.5
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.9e-86 320.9 221 76.5
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.9e-86 320.9 219 76.7
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.0e-85 318.9 217 77.4
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 5.1e-85 318.2 222 74.3
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.7e-85 317.4 220 77.3
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.1e-84 317.0 219 78.1
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.5e-84 316.6 217 76.0
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.9e-84 316.2 220 76.8
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.9e-84 316.2 219 77.2
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.5e-84 315.8 220 76.8
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.5e-84 315.8 221 74.2
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 5.7e-84 314.7 218 75.2
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 7.4e-84 314.3 217 76.0
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.3e-83 313.5 217 76.5
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.6e-83 313.2 212 76.9
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.6e-83 313.2 222 75.2
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.2e-83 312.8 222 73.4
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 2.2e-83 312.8 219 74.9
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 2.2e-83 312.8 222 75.7
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.2e-83 312.8 220 73.6
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 2.8e-83 312.4 217 76.5
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.8e-83 312.4 220 73.6
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.8e-83 312.4 220 73.6
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.7e-83 312.0 220 73.2
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 6.3e-83 311.2 221 76.5
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 8.2e-83 310.8 222 73.0
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.4e-82 310.1 222 73.0
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.4e-82 309.3 244 69.7
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.5e-81 306.6 219 74.4
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.0e-81 306.2 221 73.3
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.6e-81 305.8 221 73.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 4.5e-81 305.1 221 72.9
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 7.7e-81 304.3 219 73.5
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 7.7e-81 304.3 219 72.1
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.7e-80 303.1 212 74.5
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 8.5e-80 300.8 220 72.7
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 1.1e-79 300.4 222 72.1
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.4e-79 300.1 286 60.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.9e-79 299.7 221 71.0
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 4.2e-79 298.5 216 72.7
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 4.2e-79 298.5 220 72.3
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.2e-79 297.7 217 73.3
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.6e-78 296.6 216 71.8
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 2.1e-78 296.2 220 70.5
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 6.1e-78 294.7 220 70.9
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 2.3e-77 292.7 219 70.3
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 4.3e-76 288.5 221 68.8
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.7e-76 288.1 221 68.8
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 4.8e-75 285.0 177 84.7
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.4e-74 283.5 217 70.5
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 9.1e-74 280.8 177 79.7
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.6e-73 279.3 223 67.7
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.3e-69 266.2 169 80.5
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.4e-68 261.2 190 74.7
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.7e-67 260.0 218 65.1
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.0e-65 253.1 166 78.3
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 6.7e-61 238.0 177 73.4
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.0e-60 236.5 190 70.5
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.3e-60 235.7 199 66.8
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.2e-59 231.1 173 72.8
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 7.0e-58 228.0 227 57.7
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 7.0e-58 228.0 227 57.7
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 7.7e-57 224.6 312 46.2
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.3e-56 223.8 154 74.7
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.7e-56 223.4 154 75.3
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 2.9e-56 222.6 214 58.9
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.8e-53 213.4 154 75.3
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.0e-53 212.6 221 55.7
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.3e-51 207.2 201 56.7
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.3e-51 207.2 158 70.9
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.1e-50 204.1 159 69.8
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 4.1e-50 202.2 186 57.5
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.5e-47 193.7 186 55.4
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 2.4e-42 176.4 154 61.7
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.7e-40 170.2 234 44.4
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.4e-28 129.4 221 41.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 9.8e-28 127.9 258 34.1
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 8.6e-24 114.8 68 80.9
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.3e-19 98.2 209 34.4
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 3.2e-18 96.3 198 33.8
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.5e-15 87.4 236 30.9
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.6e-14 84.0 235 29.8
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.4e-10 68.9 46 73.9
BcaB04g18771 Brassica carinata HOM05D004368 ORTHO05D004990 1.6e-09 67.4 47 70.2
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 2.7e-09 66.6 42 71.4
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 4.6e-09 65.9 96 49.0
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.6e-08 62.0 41 70.7
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 7.3e-07 58.5 177 30.5


User provided reference genes

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