Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 4.4e-65 251.1 126 100.0
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 2.0e-62 242.3 126 96.8
Carub.0003s1365 Capsella rubella HOM05D006176 ORTHO05D007346 9.2e-55 216.9 127 89.0
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 8.0e-51 203.8 126 80.2
CARHR088900 Cardamine hirsuta HOM05D006176 ORTHO05D007346 7.5e-49 197.2 126 79.4
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 2.4e-47 192.2 126 77.0
A01p39590 Brassica napus HOM05D006176 ORTHO05D007346 7.8e-46 187.2 126 77.0
BraA01t03999Z Brassica rapa HOM05D006176 ORTHO05D007346 7.8e-46 187.2 126 77.0
C01p50530 Brassica napus HOM05D006176 ORTHO05D007346 5.0e-45 184.5 126 76.2
BolC1t05004H Brassica oleracea HOM05D006176 ORTHO05D007346 6.6e-45 184.1 126 76.2
BcaNung04891 Brassica carinata HOM05D006176 ORTHO05D007346 2.5e-44 182.2 126 75.4
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 8.6e-37 157.1 125 65.6
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 1.1e-34 150.2 129 65.1
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 1.8e-34 149.4 129 65.1
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 2.0e-33 146.0 129 62.8
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 9.9e-33 143.7 129 62.8
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 6.4e-32 141.0 121 65.3
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 8.4e-32 140.6 129 61.2
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 1.4e-31 139.8 129 61.2
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 1.4e-31 139.8 129 62.0
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 1.4e-31 139.8 129 62.0
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 1.9e-31 139.4 129 61.2
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 5.4e-31 137.9 129 60.5
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 5.4e-31 137.9 129 60.5
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 5.4e-31 137.9 129 60.5
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 7.1e-31 137.5 120 57.5
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 7.1e-31 137.5 129 60.5
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 3.5e-30 135.2 131 61.8
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 7.8e-30 134.0 129 59.7
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 7.8e-30 134.0 129 59.7
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 7.8e-30 134.0 129 59.7
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 3.9e-29 131.7 116 62.9
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 1.5e-28 129.8 110 64.5
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 1.1e-26 123.6 123 56.1
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 2.4e-26 122.5 118 58.5
BcaNung06452 Brassica carinata HOM05D006176 ORTHO05D007346 6.0e-22 107.8 72 77.8
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 7.8e-22 107.5 92 65.2
BcaC08g44161 Brassica carinata HOM05D006176 ORTHO05D007346 1.8e-18 96.3 116 49.1
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 1.4e-15 86.7 122 44.3
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 2.4e-15 85.9 122 44.3
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 3.2e-15 85.5 123 45.5
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 9.3e-15 84.0 102 45.1
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 2.7e-14 82.4 110 46.4
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 1.0e-13 80.5 107 43.9
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 1.0e-13 80.5 110 44.5
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 3.0e-13 79.0 112 43.8
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 5.1e-13 78.2 110 44.5
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 6.6e-13 77.8 102 43.1
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 8.7e-13 77.4 117 41.0
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 8.7e-13 77.4 104 44.2
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.5e-12 76.6 105 40.0
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 1.5e-12 76.6 124 39.5
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 2.5e-12 75.9 109 43.1
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 2.5e-12 75.9 104 46.2
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 2.5e-12 75.9 104 44.2
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 3.3e-12 75.5 110 41.8
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 3.3e-12 75.5 121 40.5
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 3.3e-12 75.5 121 40.5
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 3.3e-12 75.5 121 40.5
Lalb_Chr14g0361931 Lupinus albus HOM05D006176 ORTHO05D007346 4.3e-12 75.1 125 36.0
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 5.6e-12 74.7 95 46.3
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 7.4e-12 74.3 113 41.6
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 9.6e-12 73.9 96 42.7
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 1.3e-11 73.6 95 46.3
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 1.6e-11 73.2 132 41.7
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 2.1e-11 72.8 103 43.7
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 3.6e-11 72.0 114 40.4
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 4.8e-11 71.6 120 37.5
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 4.8e-11 71.6 112 42.0
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 6.2e-11 71.2 105 40.0
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 6.2e-11 71.2 105 43.8
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 8.1e-11 70.9 103 46.6
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 8.1e-11 70.9 101 46.5
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 1.1e-10 70.5 90 45.6
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 1.1e-10 70.5 103 44.7
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 4.0e-10 68.6 121 34.7
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 6.9e-10 67.8 115 38.3
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 6.9e-10 67.8 117 35.9
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 9.0e-10 67.4 101 39.6
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 1.2e-09 67.0 104 40.4
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.0e-09 66.2 107 39.3
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.0e-09 66.2 110 39.1
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 2.0e-09 66.2 124 36.3
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 2.0e-09 66.2 124 36.3
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 2.0e-09 66.2 111 42.3
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 2.6e-09 65.9 103 39.8
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 2.6e-09 65.9 92 43.5
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 3.4e-09 65.5 91 44.0
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 4.5e-09 65.1 124 36.3
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 4.5e-09 65.1 110 40.0
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 5.8e-09 64.7 106 39.6
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 5.8e-09 64.7 106 39.6
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 5.8e-09 64.7 118 39.0
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 1.3e-08 63.5 123 35.0
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 1.7e-08 63.2 107 37.4
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 4.9e-08 61.6 96 41.7
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 6.4e-08 61.2 107 36.4
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 1.1e-07 60.5 99 39.4
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 1.4e-07 60.1 105 35.2
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 2.4e-07 59.3 102 40.2
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 3.2e-07 58.9 96 42.7
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 7.1e-07 57.8 91 40.7
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 7.1e-07 57.8 99 31.3
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 7.1e-07 57.8 89 39.3
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 7.1e-07 57.8 109 39.4
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 2.1e-06 56.2 109 35.8
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 2.1e-06 56.2 97 38.1
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 2.1e-06 56.2 103 34.0
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 3.5e-06 55.5 97 37.1


User provided reference genes

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