Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 7.3e-248 860.1 444 100.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 5.8e-221 770.8 444 89.4
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 5.0e-180 634.8 451 73.8
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.7e-143 513.5 445 61.3
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.2e-141 507.3 431 62.2
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.2e-138 497.3 441 59.0
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 3.6e-138 495.7 438 59.6
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.8e-121 440.3 406 56.4
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 5.2e-121 438.7 442 54.1
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 5.2e-121 438.7 442 54.1
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 5.2e-121 438.7 442 54.1
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 2.1e-117 426.8 451 52.5
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.3e-116 424.1 443 52.6
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.7e-116 423.7 443 52.6
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 3.8e-111 406.0 453 47.5
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 3.2e-102 376.3 402 49.5
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 7.1e-102 375.2 399 49.6
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 3.1e-97 359.8 408 46.8
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.2e-96 357.8 461 44.0
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.0e-96 357.1 402 45.5
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 2.6e-96 356.7 400 46.5
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 2.6e-96 356.7 399 44.9
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 3.4e-96 356.3 444 46.2
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 5.8e-96 355.5 397 48.1
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.8e-95 352.8 392 47.2
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 3.8e-95 352.8 440 46.6
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 8.4e-95 351.7 397 47.4
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.4e-94 350.9 440 46.4
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 3.2e-94 349.7 400 46.2
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 3.2e-94 349.7 395 48.6
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 5.4e-94 349.0 427 45.7
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 2.7e-93 346.7 457 45.5
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.7e-93 346.7 427 45.2
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 7.9e-93 345.1 444 46.2
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 6.7e-92 342.0 458 43.7
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.5e-91 340.9 407 45.7
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 4.3e-91 339.3 412 44.9
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 9.6e-91 338.2 419 43.7
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.6e-90 337.4 419 44.6
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.1e-90 337.0 390 47.2
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.4e-89 333.6 398 45.0
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 4.0e-89 332.8 401 43.6
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.3e-89 332.4 392 45.2
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 9.0e-89 331.6 394 45.7
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 9.0e-89 331.6 393 46.8
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.2e-88 331.3 442 44.3
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 2.6e-88 330.1 407 45.2
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 2.6e-88 330.1 404 44.1
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.0e-87 328.2 409 43.0
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 3.8e-87 326.2 402 44.0
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 3.8e-87 326.2 444 43.9
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 4.9e-87 325.9 357 46.8
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 4.9e-87 325.9 437 41.4
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 4.9e-87 325.9 443 41.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 4.9e-87 325.9 399 46.1
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.1e-86 324.7 394 45.2
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.4e-86 324.3 407 44.0
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 2.5e-86 323.6 396 45.5
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.2e-86 323.2 454 40.5
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 4.2e-86 322.8 442 42.3
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 1.6e-85 320.9 423 41.4
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 2.1e-85 320.5 419 43.7
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 6.0e-85 318.9 412 43.4
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 7.9e-85 318.5 399 44.6
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.0e-84 318.2 406 41.6
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.3e-84 317.8 431 42.0
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.8e-84 317.4 398 43.5
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 3.9e-84 316.2 446 41.9
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 5.1e-84 315.8 432 39.8
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 1.9e-83 313.9 399 43.1
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.9e-83 313.9 441 41.5
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 5.7e-83 312.4 440 41.8
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 7.4e-83 312.0 401 42.4
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.6e-82 310.8 404 42.8
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.8e-82 310.1 397 42.8
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 4.8e-82 309.3 372 48.9
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.1e-81 306.6 449 40.5
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 3.1e-81 306.6 429 41.3
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 4.0e-81 306.2 434 40.8
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.9e-81 305.4 448 40.4
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.0e-81 305.1 448 40.2
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.2e-80 304.7 352 47.4
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.5e-80 304.3 455 40.4
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 2.0e-80 303.9 447 38.5
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 3.4e-80 303.1 444 40.5
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.2e-78 296.6 404 41.3
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.2e-77 294.7 426 40.6
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 2.3e-76 290.4 422 40.5
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.7e-76 288.5 480 37.9
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 8.7e-76 288.5 412 42.0
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.1e-75 288.1 425 39.8
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.5e-75 287.7 405 41.2
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.9e-75 287.3 442 39.8
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 7.4e-75 285.4 412 41.3
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 9.7e-75 285.0 317 46.4
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 9.7e-75 285.0 437 37.3
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.1e-73 281.6 399 40.6
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.4e-73 280.4 416 38.2
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 3.4e-72 276.6 423 39.2
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 7.7e-72 275.4 423 37.4
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.3e-71 274.6 428 36.4
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.9e-70 270.8 410 37.6
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 4.2e-70 269.6 607 30.3
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 9.4e-70 268.5 423 37.1
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.6e-69 267.7 436 35.3
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.0e-68 263.5 512 34.6
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 8.2e-66 255.4 462 33.8
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.9e-60 236.5 242 54.5
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.1e-59 235.0 409 35.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 7.4e-59 232.3 429 35.0
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.2e-58 230.7 248 49.2
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.8e-57 227.6 390 36.4
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 7.2e-54 215.7 316 38.9
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 7.2e-54 215.7 248 44.4
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 9.4e-54 215.3 446 33.9
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 5.7e-51 206.1 300 41.0
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 5.7e-51 206.1 412 32.3
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 8.2e-50 202.2 220 45.0
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.8e-49 201.1 429 34.0
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.5e-46 191.4 423 32.4
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.2e-46 190.3 287 38.7
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 8.8e-44 182.2 220 43.6
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 8.8e-44 182.2 400 32.8
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.1e-41 173.7 442 30.1
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.0e-40 171.0 307 34.5
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 8.5e-39 165.6 437 30.9
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.6e-35 154.1 230 39.6
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.3e-31 141.7 157 51.6
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.5e-30 137.5 238 32.8
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 9.5e-30 135.6 282 33.3
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-27 128.6 140 42.9
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.6e-27 127.5 108 55.6
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.4e-27 126.7 290 31.4
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 4.4e-27 126.7 190 45.3
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.9e-26 123.2 367 29.2
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-24 118.2 243 34.2
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.0e-23 113.2 398 29.6
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 3.3e-22 110.5 185 38.9
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.3e-22 110.5 399 28.6
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 4.3e-22 110.2 339 28.3
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.1e-21 107.8 105 52.4
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.0e-19 101.3 87 55.2
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 3.4e-19 100.5 111 44.1
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.9e-17 94.7 457 24.7
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.2e-17 94.0 116 43.1
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.6e-15 86.3 105 42.9
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.5e-14 85.1 165 35.8
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.8e-13 80.9 150 36.0
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.9e-10 70.9 105 35.2
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 6.4e-10 69.7 94 38.3
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 5.4e-09 66.6 114 37.7
ATR0589G117 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.5e-06 57.8 88 40.9


User provided reference genes

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