Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 4.0e-23 110.9 71 100.0
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 4.0e-23 110.9 71 100.0
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 1.3e-21 105.9 71 87.3
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 8.3e-21 103.2 71 83.1
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 1.3e-18 95.9 71 84.5
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 6.6e-18 93.6 71 83.1
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 6.6e-18 93.6 71 83.1
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 6.6e-18 93.6 71 83.1
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 6.6e-18 93.6 71 83.1
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 6.6e-18 93.6 71 83.1
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 1.3e-13 79.3 60 81.7
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 8.3e-13 76.6 66 72.7
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 7.1e-12 73.6 64 71.9
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 9.2e-12 73.2 71 70.4
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 2.7e-11 71.6 66 80.3
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 1.3e-10 69.3 64 67.2
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 1.7e-10 68.9 66 72.7
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 5.1e-10 67.4 66 66.7
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 5.1e-10 67.4 65 63.1
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 5.1e-10 67.4 66 69.7
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 6.6e-10 67.0 71 64.8
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 1.1e-09 66.2 66 68.2
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 1.5e-09 65.9 66 60.6
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 1.9e-09 65.5 64 62.5
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 3.3e-09 64.7 66 69.7
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 3.3e-09 64.7 67 67.2
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 4.3e-09 64.3 64 65.6
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 4.3e-09 64.3 58 69.0
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 4.3e-09 64.3 59 74.6
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 4.3e-09 64.3 65 67.7
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 4.3e-09 64.3 67 70.1
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 5.6e-09 63.9 66 69.7
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 5.6e-09 63.9 60 75.0
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 5.6e-09 63.9 43 81.4
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 5.6e-09 63.9 72 69.4
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 7.3e-09 63.5 66 66.7
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 7.3e-09 63.5 64 65.6
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 7.3e-09 63.5 66 66.7
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 1.2e-08 62.8 60 70.0
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 1.2e-08 62.8 64 64.1
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 1.2e-08 62.8 64 64.1
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 1.6e-08 62.4 64 67.2
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 2.8e-08 61.6 64 57.8
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 3.6e-08 61.2 64 59.4
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 4.7e-08 60.8 42 81.0
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 8.1e-08 60.1 71 67.6
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 8.1e-08 60.1 43 76.7
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 1.1e-07 59.7 64 65.6
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 1.4e-07 59.3 67 65.7
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 1.8e-07 58.9 59 72.9
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 1.8e-07 58.9 64 64.1
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 2.4e-07 58.5 66 66.7
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 2.4e-07 58.5 43 74.4
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 2.4e-07 58.5 42 76.2
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 2.4e-07 58.5 41 78.0
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 4.0e-07 57.8 66 54.5
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 4.0e-07 57.8 66 68.2
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 8.9e-07 56.6 67 56.7
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.2e-06 56.2 37 83.8
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.2e-06 56.2 37 83.8
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 1.2e-06 56.2 37 83.8
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 1.5e-06 55.8 38 78.9
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 1.5e-06 55.8 36 80.6
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 3.4e-06 54.7 66 59.1
Ah.03g142930 Amaranthus hybridus HOM05D007812 ORTHO05D009912 5.8e-06 53.9 55 58.2
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 5.8e-06 53.9 36 77.8
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 7.6e-06 53.5 36 75.0
Sabra03G0023900 Salix brachista HOM05D010635 ORTHO05D006336 9.9e-06 53.1 38 81.6


User provided reference genes

Program Settings