Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.4e-131 473.0 246 100.0
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 3.8e-121 438.3 245 90.6
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 9.3e-120 433.7 242 93.4
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.1e-119 432.6 244 91.0
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.1e-119 432.6 244 92.2
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 8.7e-118 427.2 242 90.5
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.3e-117 424.9 244 89.3
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 2.4e-115 419.1 248 89.9
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.3e-113 413.3 251 88.0
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.4e-112 409.8 249 87.6
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.6e-111 406.4 249 87.1
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 9.0e-107 390.6 251 82.5
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 2.9e-97 359.0 246 80.5
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.5e-93 346.7 234 74.8
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 5.7e-93 344.7 238 75.6
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 8.2e-92 340.9 235 74.0
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.5e-90 335.5 238 72.7
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.5e-90 335.1 236 74.2
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.2e-88 328.9 235 73.6
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.5e-88 328.2 239 72.8
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.4e-86 323.6 238 71.8
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.8e-86 323.2 236 72.0
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.2e-84 316.2 233 73.0
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 5.3e-83 311.6 233 72.1
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 5.3e-83 311.6 233 72.1
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 5.3e-83 311.6 238 70.6
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 5.0e-81 305.1 234 71.4
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 7.5e-77 291.2 221 66.1
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 2.4e-75 286.2 226 65.0
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.2e-73 279.6 226 61.5
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 5.0e-73 278.5 224 64.7
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.1e-72 277.3 223 63.7
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.5e-72 276.9 225 62.7
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 2.5e-72 276.2 232 64.2
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 9.4e-72 274.2 222 62.6
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.2e-71 273.9 231 62.8
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.7e-71 272.7 223 62.8
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 3.6e-71 272.3 238 61.3
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 6.1e-71 271.6 230 60.4
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 8.0e-71 271.2 225 62.2
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.8e-70 270.0 239 61.9
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 5.2e-70 268.5 224 63.4
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 8.8e-70 267.7 238 61.8
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.2e-69 267.3 234 61.5
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.5e-69 266.9 224 60.3
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 2.0e-69 266.5 219 62.6
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 4.4e-69 265.4 240 60.4
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 3.7e-68 262.3 238 59.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 8.3e-68 261.2 228 59.6
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.1e-67 260.8 236 58.5
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 3.1e-67 259.2 234 60.3
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 4.1e-67 258.8 225 60.0
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 4.1e-67 258.8 236 60.6
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 5.4e-67 258.5 221 60.2
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 9.2e-67 257.7 240 59.6
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.2e-66 257.3 226 60.2
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.6e-66 256.9 225 61.8
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 3.5e-66 255.8 222 61.7
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 3.5e-66 255.8 231 60.6
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 5.9e-66 255.0 249 54.2
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 7.7e-66 254.6 224 58.5
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 1.0e-65 254.2 212 62.3
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.3e-65 253.8 241 57.3
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.7e-65 253.4 224 58.9
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 3.8e-65 252.3 228 57.5
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 6.6e-65 251.5 237 57.0
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 6.6e-65 251.5 241 56.8
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.1e-64 250.8 212 62.3
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 2.5e-64 249.6 223 60.1
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.2e-63 247.3 217 57.6
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 2.1e-63 246.5 216 62.5
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.1e-63 246.5 219 59.4
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.8e-63 246.1 219 59.4
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.8e-63 246.1 227 55.1
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 3.6e-63 245.7 254 53.5
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 6.1e-63 245.0 227 58.1
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.0e-62 244.2 234 57.7
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 4.0e-62 242.3 240 56.7
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 6.8e-62 241.5 140 87.1
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 1.2e-61 240.7 216 59.7
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 7.5e-61 238.0 228 56.6
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 9.8e-61 237.7 265 51.7
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 2.2e-60 236.5 202 60.9
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 6.4e-60 235.0 194 59.8
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 6.4e-60 235.0 255 52.5
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 1.8e-59 233.4 172 63.4
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.4e-59 233.0 218 56.9
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 3.2e-59 232.6 180 61.1
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 5.4e-59 231.9 153 69.9
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 5.4e-59 231.9 153 71.9
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 5.4e-59 231.9 222 56.8
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 7.0e-59 231.5 232 53.0
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.2e-58 230.7 158 68.4
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.0e-58 229.9 217 58.1
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 3.5e-58 229.2 233 54.5
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 5.0e-57 225.3 230 50.9
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.3e-56 222.6 280 48.6
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 7.3e-56 221.5 218 56.0
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.1e-55 219.9 188 58.5
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 6.2e-55 218.4 209 54.5
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.0e-54 215.7 170 62.9
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.2e-54 215.3 238 50.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 1.7e-52 210.3 210 55.2
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 2.7e-50 203.0 234 49.1
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 3.5e-50 202.6 152 65.1
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.1e-47 193.4 133 65.4
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.4e-46 190.7 145 62.8
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 8.9e-46 188.0 227 49.8
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.6e-42 177.2 170 58.8
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 2.1e-42 176.8 167 51.5
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 4.6e-42 175.6 139 59.0
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.3e-41 174.1 224 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 1.7e-41 173.7 147 57.8
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.3e-40 169.1 156 58.3
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.8e-38 163.7 176 50.0
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 5.2e-38 162.2 136 55.1
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 9.9e-37 157.9 113 65.5
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 4.1e-35 152.5 133 53.4
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 4.0e-30 136.0 180 45.0
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.7e-28 130.6 99 66.7
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.9e-27 127.1 70 78.6
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 2.1e-26 123.6 92 65.2
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 3.9e-25 119.4 119 53.8
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.2e-21 107.8 159 39.0
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 8.4e-20 101.7 59 74.6
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 9.6e-16 88.2 74 58.1
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 6.2e-15 85.5 106 44.3
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.4e-14 84.3 117 42.7
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 9.0e-14 81.6 52 73.1
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.9e-08 63.9 128 29.7
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 3.3e-08 63.2 232 29.7
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 4.8e-07 59.3 58 55.2


User provided reference genes

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